Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N21
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77270.1 68414.m08999 expressed protein 31 0.26
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 1.9
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 1.9
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ... 27 4.3
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 27 5.7
At3g48500.1 68416.m05294 expressed protein 27 5.7
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 27 5.7
At1g15200.1 68414.m01817 protein-protein interaction regulator f... 27 7.5
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 26 10.0
>At1g77270.1 68414.m08999 expressed protein
Length = 682
Score = 31.5 bits (68), Expect = 0.26
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 244
TRY+ D + N R + + + R K+LKT + R + + P+V + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 120 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 260
P+SC C R PVCG D TY C D +++VK+G C+
Sbjct: 68 PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 153 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 260
PVCG+DG TY C D ++VK+G C+
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
identical to SP|P15455 [Plant Mol Biol 11:805-820
(1988)]; contains Pfam profile PF00190 Cupin and Prosite
11-S plant seed storage proteins signature PS00305
Length = 472
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 291 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECHEVKVAD 419
YA G G +PN+C L+ L PS +K E ++V D
Sbjct: 21 YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 118 CRRHARAQET*DRSADQTARLTTTSAS 198
C+RH A E + +AD A TTT+ +
Sbjct: 60 CKRHVEAAEKSETTADAAAATTTTTVA 86
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 285 FIYAPVCGTDGNTYPNKCSLECSRPLAP 368
F + P+ DG+T P++ +C RP P
Sbjct: 354 FDFPPIFHRDGDTNPDEIRRDCGRPPEP 381
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 27.1 bits (57), Expect = 5.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 442 RVQIHGCISATLTSWHS 392
R++ H CIS+++ WHS
Sbjct: 297 RIKKHACISSSIIGWHS 313
>At1g15200.1 68414.m01817 protein-protein interaction regulator
family protein contains Pfam PF04696: pinin/SDK/memA/
protein conserved region
Length = 423
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 80 SDRRCANIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFENRER 247
SD++ + + R S + R ++ +T R LP+P P VL + +D + NR R
Sbjct: 112 SDKKQSGLHRGSWS--QRDAEQRRTNKRYEAFALPEPAPRVLPKNED-PKLVNRNR 164
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 189 QCLLYCERDKTHSDLKIVKEGTCEEAD--PCVCTFIYAPVCGT 311
Q + +CE D+ + L+ +K+ CE D VC + + C T
Sbjct: 383 QIICFCECDELNQILEFLKKIKCERDDGTDLVCRVVESFYCAT 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,309
Number of Sequences: 28952
Number of extensions: 195780
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -