Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N19
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   0.54 
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628...    29   2.2  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.9  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.9  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.0  
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    27   6.6  
04_03_0904 + 20717005-20718087                                         27   8.7  
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    27   8.7  

>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 97   NPDYNPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFN--HPNYPPKRYDNPLARG 270
            +P+Y+P     +   P +SQPS   S      ++G    D++   PNY P    +P A G
Sbjct: 1773 SPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPG 1832


>09_02_0251 -
           6282420-6282526,6282642-6283104,6283223-6283289,
           6283536-6283808,6284096-6284907,6285402-6285479,
           6285586-6285636,6285737-6285817,6285903-6285982,
           6288481-6288652
          Length = 727

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 135 VRNNNLAWIIIRVMIDHVHSVC 70
           VR NN  W +IR+ + H H++C
Sbjct: 299 VRENNGIWSVIRLDLSHNHNLC 320


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 139 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 249
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 274 SHHGREGCRIAWVDNWDD*NRR 209
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 232 YPPKRYDNPLARGGK 276
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 76  RVHVVDHNPDYNPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDN 255
           ++H V + P  +PG  +++      ++ S+ P G    +   P FV    PN  P++Y  
Sbjct: 422 KIHAVKYRPGNHPGTRILSQEPKLQAKFSHVPGG--LAVQKSPRFV----PN--PEKYWG 473

Query: 256 PLARGGK 276
           P  + G+
Sbjct: 474 PKTKAGR 480


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
 Frame = +1

Query: 100 PDYNPGQVVIANPDPFFSQPSNGPSG-NYEPISTGPAFVDFNHPNY--PPKRY 249
           P Y P       P P+  QP   PS    +P  T P +     P Y  PP  Y
Sbjct: 300 PTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSY 352


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 135 VRNNNLAWIIIRVMIDHVHSV 73
           +   NL W IIRV +DH H +
Sbjct: 483 ISKRNLIWRIIRVNLDHNHKM 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,462
Number of Sequences: 37544
Number of extensions: 214281
Number of successful extensions: 509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)