Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N18
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 1.7
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 2.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 3.9
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 5.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.1
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 5.1
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 9.0
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 9.0
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 391 DPVLITNKRDELALKLELKTDYAG 462
D + I NKR ALK LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +1
Query: 43 LITVVLSALVTRVSLTPLCNNTAVSITSN------DSPPFNNADPVMQLYNSVIVSDYKA 204
LI L ++VSL+P+ + + S+T++ S P + P M+ +S + S ++
Sbjct: 288 LIAQNLHTSASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMKALSSGVESQDES 347
Query: 205 AVKTTFQL 228
+ FQ+
Sbjct: 348 VASSNFQV 355
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 82 SLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSD--YKAAVKTTFQLEKECRSDVI 255
+LTP + A S + +PP +N + + + +++ +K+ V+T E +S+
Sbjct: 205 TLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKSNDN 264
Query: 256 SSV 264
SV
Sbjct: 265 QSV 267
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +1
Query: 13 RRRIDDDKMILITVVLSALVTRVSLT------PLCNNTAVSITSNDSPPFNNADPVMQLY 174
++R+ +K+I VL AL R T P + +S+++ D P P + LY
Sbjct: 193 KKRVAQEKVIAAKTVLLALQERHIKTKTTEHPPDLGDAMISLSTFDDPKSELFFPTILLY 252
Query: 175 NSVIVSDYKAAV 210
V SD+ +V
Sbjct: 253 PLVYQSDFVPSV 264
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 61 SALVTRVSLTPLCNNTAVSITSNDSPPFNNA 153
S T S TPL + + + TS S PF N+
Sbjct: 544 STTATSASSTPLTSVNSTTATSASSTPFGNS 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 46 ITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 156
+T V S T S TP N+T S S + F N +
Sbjct: 555 LTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTN 591
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 167 SYTIASSSVTTRLLLKLPFN*KRNAEVTSSAPS*INYSSKDNQTSSNTLTVS 322
S ++ASSS T+ L N +A TSSA S SS + +SN+ T S
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPTSSATS----SSLSSTAASNSATSS 193
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 58 LSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIVSDYKAAVKTTF 222
+S VT + TPL N+T ++ S FN + S +S+ A +TF
Sbjct: 597 VSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTF 651
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 250 VISSVVNKLLLEGQPNVVEYAYSLWY 327
V+ NK+ ++G+PNV + WY
Sbjct: 22 VLIDAFNKVTIDGKPNVQHQQPTYWY 47
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 28 DDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVM-QLYNSVIVSDYKA 204
DD LIT+ L +L V L +T S TS SPP + P Q + + +S+Y
Sbjct: 675 DDSDALITIALDSLY--VLLNMRAKSTPNS-TSFSSPPTPHRSPFSGQAFTGMGLSNYSL 731
Query: 205 AVKTTF 222
++F
Sbjct: 732 MSSSSF 737
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 31 DKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSP 138
D I+ VVLSA V SL P NT V+ ++SP
Sbjct: 97 DGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESP 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,496
Number of Sequences: 5004
Number of extensions: 32752
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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