Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N18
(519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1) 29 2.3
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04) 29 3.0
SB_9756| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.0
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 28 5.3
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10) 28 5.3
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07) 27 7.0
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 27 9.3
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 73 TRVSLTPLCNNTAVSITSNDSPPFNNAD 156
T+ S TP+C + A T+N SP N++D
Sbjct: 570 TQSSATPMCQSGATDTTNNQSPAVNSSD 597
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 230 KRNAEVTSSAPS*INYSSKDNQTSSNTLTVSGTDP 334
+ N +VT P ++YSS D+ N GT+P
Sbjct: 820 RHNDDVTDKKPRLVDYSSADSSDHDNAADNKGTEP 854
>SB_1780| Best HMM Match : Retinin_C (HMM E-Value=7.1)
Length = 317
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 DDDKMILITVVLSA-LVTRVSLTPLCNNTAVSITSNDSP 138
DDD L ++ A L S TPLC + + +I DSP
Sbjct: 61 DDDPASLANIINEAFLAPMASFTPLCADASPTIPPTDSP 99
>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 447
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 DDDKMILITVVLSALVTRV-SLTPLCNNTAVSITSNDSP 138
DDD L ++ A ++ + S TPLC + + +I DSP
Sbjct: 111 DDDPASLANIINEAFLSPMASFTPLCADASPTIPPTDSP 149
>SB_9756| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 608
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 67 LVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQL-YNSVIVSDYKAAVKTTFQLEKECR 243
+ T +P + V IT ND N+ PV + Y V+VS+Y +T +L
Sbjct: 356 IATDNGTSPRSAHARVHITVND---VNDNRPVFEPPYYQVMVSEYAPVGQTILRLTVSDN 412
Query: 244 SDVISSVVNKLLLEGQPN 297
+S +N ++ G PN
Sbjct: 413 DTAENSQLNLRVVSGDPN 430
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 4 IPSRRRIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITS 126
+P RR +M+++ + +++R++L+P C+N S+ S
Sbjct: 375 LPPLRRDYTHQMVVVAPLKVKMISRLTLSPTCSNKPHSLPS 415
>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
Length = 609
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 226 LEKECRSDVISSVVNKLLLE-GQPNVVEYAYSLWYRSGEDIVKVYFPIE 369
L RSD+ + L++E +PN + + WYR + VK++ E
Sbjct: 245 LSHTLRSDLADPYLEMLIIEIKKPNTKPFLIATWYRPPKSSVKLFESFE 293
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 25 DDDKMILITVVLSALVTRVSL-TPLCNNTAVSITSNDSPPFNNADPVMQL--YNSVIVSD 195
DDD L ++ A + ++ TPLC + + +I DSP + +L N+ +
Sbjct: 290 DDDPASLANIINEAFLAPMAFFTPLCADASPTIPPTDSPSVTELGVLKKLSSLNTTKATR 349
Query: 196 YKAAVKTTFQLEKECRSDVISSVVNKLLLEGQ 291
+ + + ++S++N EG+
Sbjct: 350 PDGVPGWLLKENADLLAPAVTSIINTSFAEGR 381
>SB_10682| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
Length = 165
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 232 KECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVYFPIEFRLLFNEDP 396
K C + SV N G P++ +Y + WYR+ E ++ F +F +P
Sbjct: 96 KICDFGLARSVSNITQEAGDPSLTDYVATRWYRAPEILLASPRKATFSWIFYIEP 150
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 19 RIDDDKMILITVVLSALVTRVSLTPLCNNTAVSITSNDSPPFNNAD 156
+ID+ ++IL+T A S +C ++A + T+N +P N +
Sbjct: 815 KIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGN 860
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,292
Number of Sequences: 59808
Number of extensions: 242022
Number of successful extensions: 572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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