Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N17
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.71 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   3.8  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    20   8.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 324  ALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTV 425
            +L I   + + +G+Y+C V     +DS T Q+ V
Sbjct: 1360 SLFIRDVSRNNAGEYSCHVENDYGQDSVTHQLIV 1393



 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 327 LRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTV 425
           L I +   + SG Y CVV+  +  +S    +TV
Sbjct: 292 LIIREAKVEDSGKYLCVVNNSVGGESVETVLTV 324


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 30 LCTILLLVTCFHVI 71
          L T+ L++TC HV+
Sbjct: 2  LFTVFLVLTCAHVV 15


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 293 SIREVHSSPKYTYILRFLSDYPLIY 219
           S++ +H   +++ +  F+ DY L+Y
Sbjct: 344 SLQLLHQKVQFSVLGFFVVDYTLLY 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,269
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)