Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N17
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   2.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   3.8  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   5.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.6  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 WTSRIERLVTP*RCVELYALFRRTVISL 360
           WT R ER+ TP   + ++ +F R ++ +
Sbjct: 272 WTYRFERMKTPSLFITIHKIFWRQILGM 299


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +3

Query: 150 DYTFNNDTSGLVVKWFFKSKSRLVYQ 227
           +++ + + S   ++W+   KSR+V+Q
Sbjct: 236 EFSLSGEISNAAIEWYLLEKSRVVHQ 261


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 DYTFNNDTSGLVVKWFFKSK 209
           D  FNND SGL+ K+  ++K
Sbjct: 31  DEAFNNDHSGLIHKYNIRNK 50


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 368 YLCSVHXYGRRFENETND 421
           YLCSVH   +  E ETN+
Sbjct: 63  YLCSVHEAKKWLEEETNN 80


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 33   CTILLLVTCFHVIRGDKITKM 95
            C   +L TC+H++R D + ++
Sbjct: 1560 CFAAILYTCYHLLRNDLVMEI 1580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,122
Number of Sequences: 5004
Number of extensions: 35637
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)