Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N17
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    29   1.6  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    28   3.7  
11_03_0210 - 11693750-11693797,11694017-11694094,11694285-116943...    27   4.9  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    27   6.5  
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517...    27   8.6  

>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 235 TIH*YTNLDFDLKNHFTTRPDVSLLKV*SQSNITASSTPYWIISGTTIFVI 83
           T H   N DF+L   FT   DVS   +  + +   S+TP  + SG  +F +
Sbjct: 564 TEHLQKNGDFNLLLSFTVEGDVSTKSIGFEPDTQMSTTPMVLRSGMYLFFV 614


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 69  IRGDKITKMVVPEIIQYGVEDAV 137
           I+G  IT++V PE+I+  +ED +
Sbjct: 541 IKGKPITEIVAPEVIKEAIEDEI 563


>11_03_0210 -
           11693750-11693797,11694017-11694094,11694285-11694371,
           11694751-11694884,11695021-11695093,11695352-11695408,
           11697295-11697378,11698748-11698843,11699133-11699498
          Length = 340

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276 VDLTYRASSDPLKMRRALRIIQTN-SDISGDYTCVVSTXM 392
           VDLTY+ S D +++  A R+++ +  D+   Y  VV+  +
Sbjct: 283 VDLTYKPSFDVVRVEEAPRVLERHFHDLQKKYGAVVAVDL 322


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 ILRGRVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCV 377
           I+   + LT   S +PL M RALR  +TN D+  ++  V
Sbjct: 462 IVSDALRLTSGLSWEPLVMWRALREKKTNGDVEDEHFAV 500


>08_02_0598 -
           19149218-19149524,19150325-19150896,19151374-19151762,
           19151850-19152163,19152312-19152356,19153451-19153805,
           19154361-19154430
          Length = 683

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 199 KNHFTTRPDVSLLKV*SQSNITASSTPYWIISGTTIFVILSPRITWK 59
           +NHFTT     LLK  S S I   +  Y I+ G T    L+  ++ K
Sbjct: 25  RNHFTTLDLPPLLKASSFSRIQHEAYDYIIVGGGTAGCPLAATLSQK 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,430
Number of Sequences: 37544
Number of extensions: 209478
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)