Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N17
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     33   0.13 
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)              30   0.71 
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       30   0.71 
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13)                 30   0.93 
SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12)                   29   1.2  
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         29   1.6  
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       29   2.2  
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)                      29   2.2  
SB_39368| Best HMM Match : THUMP (HMM E-Value=2.9)                     28   2.8  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   3.8  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)                 27   8.7  
SB_3465| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    27   8.7  

>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 38  NPSACHLFPCYTWRQDNKNGSPGNNPIRCRRC 133
           NP  CH F      +D+ +G  G  P RC +C
Sbjct: 314 NPFKCHNFDVEMSEEDSTDGEHGEKPFRCTQC 345


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -1

Query: 431  HEHCHLFRFRIFVHXSGHYTSIITRDITVRLNNA*SSTHL*GVTRRSIREVHS 273
            H H HL   R+ V    ++T + T  +TVRL +  + THL G  R ++R VH+
Sbjct: 1628 HNHTHLGTVRVTVRLVHNHTHLGTVRVTVRLVH--NHTHL-GTVRVTVRLVHN 1677



 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 431  HEHCHLFRFRIFVHXSGHYTSIITRDITVRLNNA*SSTHL*GVTRRSIREVHS 273
            H H HL   R+ V    ++T + T  +TVRL +  + TH  G  R ++R VH+
Sbjct: 1580 HNHSHLGTVRVTVRLVHNHTHLGTVRVTVRLVH--NHTHS-GTVRVTVRLVHN 1629



 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 431  HEHCHLFRFRIFVHXSGHYTSIITRDITVRLNNA*SSTHL*GVTRRSIREVHS 273
            H H H    R+ V    ++T + T  +TVRL +  + THL G  R ++R VH+
Sbjct: 1612 HNHTHSGTVRVTVRLVHNHTHLGTVRVTVRLVH--NHTHL-GTVRVTVRLVHN 1661



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 431  HEHCHLFRFRIFVHXSGHYTSIITRDITVRLNNA*SSTHL*GVTRRSIREVHS 273
            H H HL   R+ V    + T + T  +TVRL +  + +HL G  R ++R VH+
Sbjct: 1516 HNHTHLGTVRVTVRLVHNRTHLGTVRVTVRLVH--NHSHL-GTVRVTVRLVHN 1565



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 431  HEHCHLFRFRIFVHXSGHYTSIITRDITVRLNNA*SSTHL*GVTRRSIREVHS 273
            H H HL   R+ V    +++ + T  +TVRL +  + +HL G  R ++R VH+
Sbjct: 1548 HNHSHLGTVRVTVRLVHNHSHLGTVRVTVRLVH--NHSHL-GTVRVTVRLVHN 1597


>SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)
          Length = 898

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 365 ITRDITVRLNNA*SSTHL*GVTRRSIREVHSSPKYTYILR 246
           IT  +  +LN   + T   GVTRR ++ +    KY++ LR
Sbjct: 781 ITLGMKEKLNKTLAKTSSGGVTRRKLKPISDGSKYSFFLR 820


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 306 PLKMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMT 422
           P++MR  L +I   S   GDY C+    M  +S T  +T
Sbjct: 783 PVRMRSVLEVIPKQSRDFGDYICMARNIMGWNSHTLTLT 821


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 273 RVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCVVSTXM-DEDSKTK 413
           RV  + R   D +     L I  T +D  GDYTC+V   +   +SKTK
Sbjct: 630 RVKDSRRTKCDLVDGEVKLTIKTTRADDQGDYTCIVRNELGSAESKTK 677


>SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13)
          Length = 142

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 237 GQKPQDIGILRGRVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQ 416
           G  P  I  LRG V L  R+S   L     L  ++ N   SG YTC  +  +  DSK+  
Sbjct: 84  GDTPFHIAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCCTTNSLGSDSKSLV 137

Query: 417 MTV 425
           + V
Sbjct: 138 LLV 140


>SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12)
          Length = 89

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +3

Query: 237 GQKPQDIGILRGRVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQ 416
           G  P  +  LRG V L  R+S   L     L  ++ N   SG YTC  +  +  DSK+  
Sbjct: 31  GDTPFHVAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCFTTNTLGSDSKSLV 84

Query: 417 MTV 425
           + V
Sbjct: 85  LLV 87


>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 78  DKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKW 194
           + + K  +P+ +Q+G  D ++   D+T+N D    + +W
Sbjct: 519 ESMRKYDIPQDVQFGDIDYMVRQLDFTYNKDNFTRLPEW 557


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 321 RALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTVFV 431
           + L I QT    SG+YTC+ S      S  KQ+ + V
Sbjct: 493 KTLVIFQTEYRDSGNYTCIASNRAGNTSLAKQVDIQV 529


>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
          Length = 792

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 170 VIVESIIAVQ-YNSIFYTVLDYFRDYHFCYLVSTYNMETGDKQKDCA*MRQRH 15
           V+VE I  +  + S  +   D F  YHF +   T +    D Q+ C   RQ H
Sbjct: 443 VVVEDIRGLSVFRSTVWGETDCFVQYHFPHQTPTNDALEEDTQQRCTGRRQEH 495


>SB_39368| Best HMM Match : THUMP (HMM E-Value=2.9)
          Length = 165

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 14  CVVDASMHNPSACHLFPCYTWRQDNKNGSPG 106
           C+ D     PSAC  F   TW   N  G  G
Sbjct: 133 CIFDEKYKQPSACARFSTKTWGPQNTVGKLG 163


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 327  LRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTV 425
            L I+ T  D  G+YTC+    + E S T ++ V
Sbjct: 3021 LTIMNTTLDDEGEYTCIAKNKVGEVSCTAELLV 3053



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 312  KMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTV 425
            K R  L II    +  G+YTCV ++   +DS + ++ V
Sbjct: 3112 KDRSVLTIIDAKLNDEGEYTCVATSKAGKDSCSVELLV 3149


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 273  RVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTVFV 431
            R+D+    S D  K    LR +Q      GDYTCV    + ++ K K +TV V
Sbjct: 2602 RIDIVATKSDD--KRNMTLREVQRF--YGGDYTCVARNGIGQEQK-KTVTVAV 2649


>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
          Length = 378

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 357 SGDYTCVVSTXMDEDSKTKQMTV 425
           +G YTC  +  M  D+ T Q+TV
Sbjct: 263 AGTYTCTATNAMGSDTTTVQVTV 285


>SB_3465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 357 SGDYTCVVSTXMDEDSKTKQMTV 425
           +G YTC  +  M  D+ T Q+TV
Sbjct: 60  AGTYTCTATNAMGSDTTTVQVTV 82


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 30   LCTILLLVTCFHVIRGDKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVK 191
            LC    L    HVI  D +T+    E+     ED+ +   D T   D   LV K
Sbjct: 1204 LCNSAKLENSLHVIDVDTLTETHSFEVFDQDDEDSFLHLTDITLKGDMQVLVAK 1257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,509
Number of Sequences: 59808
Number of extensions: 272230
Number of successful extensions: 696
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)