Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N17
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01100.1 68416.m00015 early-responsive to dehydration protein...    29   1.0  
At4g14615.1 68417.m02249 expressed protein                             29   1.8  
At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containi...    28   2.4  
At3g24570.1 68416.m03087 peroxisomal membrane 22 kDa family prot...    28   3.1  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    27   5.5  
At1g06900.1 68414.m00733 peptidase M16 family protein / insulina...    27   7.2  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    26   9.6  

>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 170 VIVESIIAVQYNSIFYTVLDYFRDYHFCYLVSTYNMETGDKQK 42
           V+V  +  V  NSI  TV ++FR+YH    +S   +   DK K
Sbjct: 191 VLVSGVPLVSGNSISETVENFFREYHSSSYLSHIVVHRTDKLK 233


>At4g14615.1 68417.m02249 expressed protein
          Length = 76

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 87  TKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLVY 224
           T   V EI+++GV  AV +   YTF N+++   +K F  ++S +VY
Sbjct: 6   TSKGVLEIVKFGVYVAVPIVLMYTFANNSTN--IKKFMGNRSYVVY 49


>At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 659

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 310 RGSLD-ALYVRSTRPLSIPIS*GFCPTIH*YTNLDFDLKNHFTTRPDVSLLKV*SQSNIT 134
           RGSLD A+Y+ +    S     G CP +  YTN+   L  H   +   SL+++ S+ N  
Sbjct: 400 RGSLDGAVYIWNKMLTS-----GCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN-C 453

Query: 133 ASSTPYW--IISGTTIFVILSPRITWKQVTSRRI--VHRC 26
           A S P +   I G    +  + R+ W +   R++   HRC
Sbjct: 454 APSVPTFNAFIKG----LCDAGRLDWAEKVFRQMEQQHRC 489


>At3g24570.1 68416.m03087 peroxisomal membrane 22 kDa family protein
           contains Mpv17 / PMP22 family domain, Pfam:PF04117
          Length = 235

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 258 GILRGRVDLTYRASSDPLKMRRALRIIQTNSDISGDYTCVVSTXMDEDSKTKQMTVFV 431
           G L G  D+T +  +     RR LR+ +TN D   D    V    D + K     V +
Sbjct: 25  GFLWGFGDVTAQYITHSTAKRRLLRLTETNKDADADAEIKVKWKQDAEFKVNWKRVAI 82


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 238 PTIH*YTNLDFDLKNHFTTR-----PDVSLLKV*SQSNITASSTP 119
           P I  + N D DL+N    R     PDV LL   S SN T ++TP
Sbjct: 186 PFIRPHDNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTP 230


>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 1023

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 11  PCVVDASMHNPSACHLFPC-YTWRQDNKNGSP-GNNPIRC 124
           P  VD S+H PS     PC ++ R  N +  P   +P RC
Sbjct: 540 PSEVDNSLHLPSKNQFIPCDFSIRAINSDVDPKSQSPPRC 579


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 174 SGLVVKWFFKSKSRLVYQWIVGQKPQDIGILRGRVDLTYRASS 302
           +G +  +F++  + + YQW +  KP    +   R ++T   +S
Sbjct: 411 AGSIPVFFWRRSAYMQYQWFLPDKPDSYSVFIDRNEVTNGTTS 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,391
Number of Sequences: 28952
Number of extensions: 180217
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)