Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N12
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 54 1e-08
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 32 0.050
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 31 0.066
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 30 0.20
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.47
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 0.62
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.4
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 27 1.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 1.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 2.5
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 26 2.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 2.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 7.6
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 54.0 bits (124), Expect = 1e-08
Identities = 38/123 (30%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Frame = -3
Query: 467 PFNPGAPGAPSDPGRPSIPGTPRGPGSPFXP*TTAAXXXXXXXXXXXXXXXXXXXXPRSP 288
P P P APS P RP++P P P P A +P
Sbjct: 548 PAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVP-----EAP 602
Query: 287 FSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGNP-*PTGPWSPLSPFSP 111
P P+AP P +PS P+ P P P P +P P +P P P P P P+ P +P
Sbjct: 603 SVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAP 662
Query: 110 VIP 102
+P
Sbjct: 663 SVP 665
Score = 53.6 bits (123), Expect = 1e-08
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Frame = -3
Query: 467 PFNPGAPGAPSDPGRPSI---PGTPRGPGSPFXP*TTAAXXXXXXXXXXXXXXXXXXXXP 297
P P P AP P PS+ P P P P P AA
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEA 571
Query: 296 RSPFSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGNP-*PTGPWSPLSP 120
S P P+AP P +PS P+ P++P P P +P P +P +P P P P P+ P
Sbjct: 572 LSVPQP--PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVP 629
Query: 119 FSPVIP 102
+P +P
Sbjct: 630 EAPSVP 635
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.9 bits (69), Expect = 0.050
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -3
Query: 284 SPLIPIAPCPPGLPSKPRSPLSPFWPMI-----PGIPCGPWSPFSPGNP*PTGPWSPLSP 120
+PL P PPG+P P P +P P + P +P G P PG P P P P P
Sbjct: 491 APLPPTTFAPPGVPLPP-IPGAPGMPNLNMSQPPMVPPGMALP--PGMPAPF-PGYPAVP 546
Query: 119 FSPVIPG 99
P IPG
Sbjct: 547 AMPGIPG 553
Score = 31.9 bits (69), Expect = 0.050
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 391 PGPRGVPGIDGLPGSDGAPGAPG 459
PG VP + G+PG+ PGAPG
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562
Score = 29.5 bits (63), Expect = 0.27
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 449 PGAPSDPGRPSIPGTPRGPGSP 384
PG P+ P P IPG PG+P
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAP 561
Score = 29.1 bits (62), Expect = 0.35
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 281 PLIPIAPC-PPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGN 156
P++P PPG+P+ P P P +PGIP P +PG+
Sbjct: 523 PMVPPGMALPPGMPAP--FPGYPAVPAMPGIPGATAPPGAPGS 563
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +1
Query: 40 GREGIAGQPGNDGAQGPTGFPGITGEKGDKGDQGPVGYGLP 162
G + PG GA P G PG P G +P
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 31.5 bits (68), Expect = 0.066
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 203 IPGIPCGPWSPFSPGNP*PTGPWSP 129
I G CG W P NP GPWSP
Sbjct: 327 IEGAGCGEWKPPMIRNPNYRGPWSP 351
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 29.9 bits (64), Expect = 0.20
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 40 GREGIAGQPGNDGAQGPTGFPG 105
G EG+ GQPG G GFPG
Sbjct: 72 GEEGLNGQPGGPGGGPGEGFPG 93
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 467 PFNPGAPGAPSDPG-RPSIPGTPRG 396
P +P GAPS+ RPS+P TP G
Sbjct: 316 PSSPKTEGAPSNAQFRPSLPATPNG 340
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.62
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 304 PGRSGLTGEPGYKGDTGEPAAVVYGXKGEPGPRGVPGIDGLPGSDG-APGAPGL 462
PG + PG P +G P G PG+ PG++ G PGL
Sbjct: 442 PGMEAMAMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSA-PGTEAPGTGTPGL 494
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -3
Query: 287 FSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPF-SPGNP*PTGPWSPLSPFSP 111
F P+ PI P ++ P SP P+ G+P P P S P+ P P+ P
Sbjct: 387 FQPVQPIQPVQ---STQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKP 443
Query: 110 VIP 102
P
Sbjct: 444 AQP 446
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 1.4
Identities = 24/110 (21%), Positives = 35/110 (31%)
Frame = -3
Query: 458 PGAPGAPSDPGRPSIPGTPRGPGSPFXP*TTAAXXXXXXXXXXXXXXXXXXXXPRSPFSP 279
P PGAPS+ +P P +P P A P P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQP--KAPGMVTNAPAPSSAPAPPAPVSQLPPAVP 1490
Query: 278 LIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGNP*PTGPWSP 129
+P+ P + +P S ++P +P S +P P P P
Sbjct: 1491 NVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHP 1540
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 290 PFSPLIPIAPCPPGLPSKPRSPLSPF 213
PF+ L+PI P G K R P+ PF
Sbjct: 238 PFNLLVPIPGTPVGDAVKERLPIHPF 263
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 1.9
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 216 FLAYDTWYSLWSLVTLFSW 160
++ Y+ W + WS++TLF +
Sbjct: 359 YVTYNGWLAQWSMITLFDY 377
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = -3
Query: 290 PFSPLIPIAPCPPGLPSKPRSPLSPFW-----PMIPGIPCGPWSPFSPGN 156
PF IP++P P PS P+ P P I P P S FSPG+
Sbjct: 299 PFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAP-SYFSPGS 347
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 275 IPIAPCPPGLPSKPRSPLSPFWPMIPGIP 189
+P P G+P P P+SP +P P
Sbjct: 295 LPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 218 PFWPMIPGIPCGPWSPFSPGN 156
PF+P GIP P P SP +
Sbjct: 296 PFYPFDSGIPVSPNIPVSPSS 316
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 290 PFSPLIPIAPCP--PGLPSKPRSPLSPFWPMIPGIP 189
P+S + + P P P PSKPR + P+ P P
Sbjct: 145 PYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPPTPP 180
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 284 SPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPF 168
+PL+P P PPG+ SP + IPG P P PF
Sbjct: 286 APLVP--PPPPGMVMASPSPAAA---TIPGAPVMPNIPF 319
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 467 PFNPGAPGAPSDPGRPSIPGTPRGPGSPF 381
P PG A P +IPG P P PF
Sbjct: 291 PPPPGMVMASPSPAAATIPGAPVMPNIPF 319
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 126 VTLFASYTRKSCWSLSPII 70
+T A YT SCW LS II
Sbjct: 1451 LTKDALYTNGSCWELSVII 1469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.146 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,676
Number of Sequences: 5004
Number of extensions: 36757
Number of successful extensions: 95
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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