Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N11
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 29 0.19
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 0.34
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 1.8
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 2.4
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 3.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 4.1
SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces po... 25 5.5
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 24 9.6
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 24 9.6
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 24 9.6
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 24 9.6
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.19
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 73 PFGVSVRSAQQIQHELQPL 17
PFGV ++SAQ++Q +L PL
Sbjct: 156 PFGVDLKSAQELQSQLAPL 174
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.7 bits (61), Expect = 0.34
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 64 LQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 171
L+ E ++L+D + A E+++ LQE +E +D +N+
Sbjct: 327 LKLETEKLQDQIKALLERNQSLQEALETVKNDEKNL 362
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 55 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 171
+QK +KE +LE+DL R K + EE E + ++ +
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKEL 195
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 69 LEFLYGALSKFSTSFSLFQLC 7
LE L+G +S FST S + LC
Sbjct: 715 LEQLWGDMSDFSTHLSFYYLC 735
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 59 RNSKRRSTGLKTTWSPSAKRANS 127
R S RRST SPS+KRA+S
Sbjct: 296 RVSPRRSTAASKKKSPSSKRASS 318
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 58 QKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHD 159
+KLQ+ +L D+ +AE EK+ + E ++T D
Sbjct: 504 KKLQERTSKLTDEDIAEIEKTSVKLLEAQSTPAD 537
>SPAC3F10.15c |spo12||Spo12 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 90
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 153 PRHSEHVNTPSPSLPYPCPAR 215
P+H+ +V +P+ SL PC A+
Sbjct: 39 PKHALNVASPTDSLMSPCTAK 59
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 52 SVQKLQKEVDRLEDDLVAEREKSKLLQEEMEA 147
S++ + + ++ +EDD+ RE++ + +EM+A
Sbjct: 834 SLEDVLESINNIEDDVGFSREEAIVALKEMDA 865
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 162 SEHVNTPSPSLPYPCPARS 218
S NTPSP+LP P+ S
Sbjct: 165 SSPTNTPSPNLPVSQPSAS 183
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 367 KSGWQLL*N**RYHSFAP 314
+SGW LL N ++SFAP
Sbjct: 130 QSGWHLLFNMVAFYSFAP 147
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 253 RNDIVRTVRRYDSSGSVYHLVGRTSDNVISFR 348
R++ V +RR G+V+H G + +V+ R
Sbjct: 82 RDNFVNIIRRKSGGGTVFHDFGNLNYSVLMNR 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,460
Number of Sequences: 5004
Number of extensions: 21843
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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