Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N11
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 31 0.20
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 31 0.27
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 0.47
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 29 0.82
At5g56820.1 68418.m07090 F-box family protein contains F-box dom... 29 1.1
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 1.1
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 1.1
At1g62305.2 68414.m07030 expressed protein contains Pfam profile... 29 1.4
At1g62305.1 68414.m07029 expressed protein contains Pfam profile... 29 1.4
At1g21810.1 68414.m02729 expressed protein 28 1.9
At4g17440.1 68417.m02610 expressed protein 27 4.4
At3g02930.1 68416.m00288 expressed protein ; expression support... 27 4.4
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 27 4.4
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 5.8
At1g48210.1 68414.m05382 serine/threonine protein kinase, putati... 27 5.8
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 27 5.8
At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ... 26 7.6
At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr... 26 7.6
At1g50730.1 68414.m05705 expressed protein 26 7.6
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 31.5 bits (68), Expect = 0.20
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 67 QKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQN 168
Q +D L D L+ +R K KL +EE + HD +N
Sbjct: 184 QIRIDSLIDKLIGKRHKEKLEEEEESTSTHDRRN 217
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 31.1 bits (67), Expect = 0.27
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 126 PAGGNGGHAPRHSEHVNTPSPSLPYPCPARSFVSL 230
P G NG P + VNT S P+P PA S +L
Sbjct: 293 PNGNNGNLFPPVASSVNTGRSSFPHPSPAMSATAL 327
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 0.47
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 178 VFTCSECRGAWPPFPPAGVCS--FRARRPGRLQACRPPFGVSVRSAQQIQHE 29
V TCS C G P G CS R RR R+ + + P GV S +++ E
Sbjct: 270 VMTCSPCNGTGEISKPCGACSGDGRVRRTKRI-SLKVPAGVDSGSRLRVRGE 320
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 29.5 bits (63), Expect = 0.82
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 178 VFTCSECRGAWPPFPPAGVCS--FRARRPGRLQACRPPFGVSVRSAQQIQHE 29
V TCS C G P G CS R R+ R+ + + P GV S +++ E
Sbjct: 264 VMTCSSCNGTGEISTPCGTCSGDGRVRKTKRI-SLKVPAGVDSGSRLRVRGE 314
>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 92 TTWSPSAKRANSCRRKWRPRSTTF 163
T W PS +R + C +R RSTTF
Sbjct: 205 TIWVPSLQRLSICDESYRFRSTTF 228
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 55 VQKLQKEVDRLEDDLVA---EREKSKLLQEEMEATLHDIQN 168
VQ+L +E +L DL + E EKSK E + + LH++ +
Sbjct: 438 VQRLSEEKSKLLSDLESSKEEEEKSKKAMESLASALHEVSS 478
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 52 SVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 171
+V L KEV +E ++ ERE K L+ ++E + + M
Sbjct: 565 TVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKSLDEM 604
>At1g62305.2 68414.m07030 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 354
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 62 NSKRRSTGLKTTWSPSAKRANSCRRKWRPRSTTFRTC 172
N R T TTW+ SAK+A + + W P + T C
Sbjct: 256 NEMERRTVTYTTWNLSAKKAEA--KSWHPLTFTSDNC 290
>At1g62305.1 68414.m07029 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 378
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 62 NSKRRSTGLKTTWSPSAKRANSCRRKWRPRSTTFRTC 172
N R T TTW+ SAK+A + + W P + T C
Sbjct: 280 NEMERRTVTYTTWNLSAKKAEA--KSWHPLTFTSDNC 314
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 55 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHD 159
++KLQ E D L+ +++ +E K E+EA + D
Sbjct: 353 LEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGD 387
>At4g17440.1 68417.m02610 expressed protein
Length = 215
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 268 ERYHSDRNRTRRASETNERAGQG*GSEGEGVFTCSECRG 152
ER ++ +R R G +G GVFT C G
Sbjct: 70 EREETEEEEAKRTWNLRPRKAYGGSKKGNGVFTAEVCGG 108
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 52 SVQKLQKEVDRLEDDLVA---EREKSKLLQEEMEATLHDIQN 168
SVQ+L +E ++ +L + E EKSK E + + LH++ +
Sbjct: 426 SVQRLLEEKKKILSELESSKEEEEKSKKAMESLASALHEVSS 467
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 178 VFTCSECRGAWPPFPPAGVCSFRARRPGRLQACRPPFGVSVRSAQQIQHE 29
VF C C +P F G RR L+ PP S + + ++HE
Sbjct: 33 VFACKTCNKEFPSFQALGGHRASHRRSAALEGHAPP---SPKRVKPVKHE 79
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 58 QKLQKEVDRL-EDDLVAEREKSKLLQEEMEATLHDIQN 168
+ L +V+ L ED+ E E+ K + E ME LHD N
Sbjct: 197 ESLAHKVNTLVEDEDAKEEERRKRVAEAMEGRLHDRWN 234
>At1g48210.1 68414.m05382 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 [Lycopersicon
esculentum] gi|3668069|gb|AAC61805; contains protein
kinase domain, Pfam:PF00069
Length = 363
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 126 PAGGNGGHAPRHSEHVNTP-SPSLPYPCPA 212
PAG NGGH R +N P P P PA
Sbjct: 26 PAGYNGGHYQRADPPMNQPVIPMQPISVPA 55
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 55 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHD 159
V ++ E+ +++ DL ERE + LQ+E E +++
Sbjct: 354 VDLVEHEIQKIDRDLRNERESALSLQQEKEMLINE 388
>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 847
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 64 LQKEVDRLEDDLVAEREKSKLLQEEMEATLHDI 162
L + + LE+ +E E K+ Q+E+E LHDI
Sbjct: 232 LMRIISSLEE--TSEGELEKMAQQELEVYLHDI 262
>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, INTERPRO:IPR001611; contains
serine/threonine protein kinases active-site signature,
Prosite:PS00108
Length = 838
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 244 YCDRNDIVRTVRRYDSSGSV-YHLVGRTSDNVISF 345
YCD + + V Y S+G + +HL GR + V+S+
Sbjct: 593 YCDDRNHLALVYEYMSNGDLKHHLSGRNNGFVLSW 627
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 61 KLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDI 162
K++ +D L DD+V+ + K L EE +A+L I
Sbjct: 509 KMENHLDALLDDIVS-LARDKFLSEEEQASLQSI 541
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,701,643
Number of Sequences: 28952
Number of extensions: 127454
Number of successful extensions: 542
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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