Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N10
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 38 0.004
09_02_0462 + 9583558-9584910 35 0.038
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 32 0.26
12_01_0385 - 3020078-3020132,3020510-3020577 29 2.5
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 27 5.7
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 27 7.5
09_04_0528 - 18348071-18348136,18348477-18351209 27 10.0
04_02_0023 + 8655524-8655653,8655742-8656475,8656553-8656918,865... 27 10.0
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 27 10.0
02_03_0310 - 17577954-17578133,17578243-17578297,17578773-175788... 27 10.0
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 37.9 bits (84), Expect = 0.004
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +2
Query: 2 SEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
+E+ IL W+R+ ++ KG+ F+ ++ FV+WL+ A
Sbjct: 438 AEDTILLWFRKGSNPKGRQSFVKALEPFVKWLEEA 472
>09_02_0462 + 9583558-9584910
Length = 450
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 5 EEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
EEVI +WY E + + + K FVEWLQ+A
Sbjct: 410 EEVITQWYNESVAGGKESQVVKNAKPFVEWLQSA 443
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 31.9 bits (69), Expect = 0.26
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 317 NCIIMISDLSRETSEWRRRILKKNP 391
N ++ ++DL RET +W R+IL+ +P
Sbjct: 248 NVVVPLADLERETVKWCRKILRNSP 272
>12_01_0385 - 3020078-3020132,3020510-3020577
Length = 40
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 453 NYARVYVSLCVYGCVFIVYLCGFFFKI 373
NYA VY V G +FI+ +CG F +I
Sbjct: 11 NYAVVYAFEGVVGDIFIMMICGHFCEI 37
>04_04_1193 +
31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 331 HYNTIIKNGGWRRAAGFG*INSAVRR-FEFLSVCLSVC-LYVSLW 203
H+N I+KN W+ G I +++R ++ L L C LY SL+
Sbjct: 477 HWNNILKNEDWKSMQLSGGIMPSLKRSYDMLPYQLKQCFLYCSLF 521
>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 427 VCVRMCFYCVFMWIFF*NPP--TPFARFSRQITNHYNTIIK 311
VCVR C CV +I F + + RF ITN T+++
Sbjct: 891 VCVRQCEGCVLAFIAFEDSSIRSRAERFLSSITNSIETVLR 931
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 441 VYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLIIIIQLLKMEDGVVR 289
+YV Y +YL G+ + I + LV +DK+ +I+ L++ED +R
Sbjct: 157 IYVPPTNYNSEQQLYLPGYDYSIND-NELVGIDKNRQTLIESLRLEDCSLR 206
>04_02_0023 +
8655524-8655653,8655742-8656475,8656553-8656918,
8657062-8657183,8657210-8657786
Length = 642
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 320 CIIMISDLSRETSEWRRRILKKNPHKYTIKTHPYTHRE 433
C + + SRE+SE R + ++N H + + T Y +E
Sbjct: 194 CSLKNTQESRESSEAHRLLQQRNEHPHRLGTAEYIGKE 231
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 462 GLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLI 331
G ++ A Y SLC Y +F+V G K+ R L ++D SL+
Sbjct: 30 GKVDVALYYESLCPYSAMFVV---GSLAKVFRDGLLDAVDLSLV 70
>02_03_0310 -
17577954-17578133,17578243-17578297,17578773-17578860,
17580024-17580318
Length = 205
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 272 NLPEPRRTTPSSIFNNCIIMI 334
++P P+RTT S NC+++I
Sbjct: 99 DVPPPKRTTTSHNLRNCVLVI 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,900
Number of Sequences: 37544
Number of extensions: 219218
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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