Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N10
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    55   3e-08
SB_16189| Best HMM Match : rve (HMM E-Value=0.3)                       29   1.9  
SB_30995| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)                    29   2.5  
SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)               28   3.4  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        27   7.7  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   SEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
           SE+ I+ WY+  NS+KGK MFL+QMKK +EWLQ+A
Sbjct: 296 SEDSIIAWYKGENSTKGKSMFLEQMKKMIEWLQSA 330


>SB_16189| Best HMM Match : rve (HMM E-Value=0.3)
          Length = 595

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 373 PPTPFARFSRQITNH 329
           PPT +ARFS QI NH
Sbjct: 147 PPTTYARFSEQIPNH 161


>SB_30995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 373 PPTPFARFSRQITNH 329
           PPT +ARFS QI NH
Sbjct: 48  PPTTYARFSEQIPNH 62


>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 TDRQEFKPADGAVNLPEPRRTTPSSI 310
           T+R+   PA  A+NLP P   TPSS+
Sbjct: 82  TNRRTRIPAKPALNLPSPPSKTPSSV 107


>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
          Length = 170

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 TDRQEFKPADGAVNLPEPRRTTPSSI 310
           T+R+   PA  A+NLP P   TPSS+
Sbjct: 82  TNRRTRIPAKPALNLPSPPSKTPSSV 107


>SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)
          Length = 355

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 215 IQTHRQTDRQEFKPADGAVNLPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILKK--- 385
           + THR T+ Q ++P D    +P  R T P S     +  ++ L         R+      
Sbjct: 208 LPTHRLTNPQAYQPTD----IPTHRLTNPKSYQLTGLYQLTGLPTHRLIPTHRLTNSQAY 263

Query: 386 -NPHKYTIKTHPYTHRETYTRA 448
            NP  Y +   P THR T ++A
Sbjct: 264 TNPQTYQLTGLP-THRHTNSQA 284


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 460  FNELCACVCLSVCVRM--CFYCVFMWIFF*NPPTP 362
            F  L ACV LSVCV +  CF CV + +   +P  P
Sbjct: 1154 FTCLYACVNLSVCVCLPVCFSCVHLSVRVLSPVCP 1188



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 460  FNELCACVCLSV--CVRMCFYCVFMWIFF*NPPTP 362
            F  L ACV LSV  C+ +CF CV + +   +P  P
Sbjct: 1228 FTCLSACVHLSVRVCLPVCFSCVHLSVRVCSPVCP 1262



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 460  FNELCACVCLSV--CVRMCFYCVFMWIFF*NPPTP 362
            F  L ACV LSV  C+ +CF CV + +   +P  P
Sbjct: 1117 FTCLYACVHLSVRVCLPVCFSCVHLSVRVLSPVCP 1151


>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 213 TYKHTDRQTDRNSNRRT 263
           T + TDRQTDR ++RRT
Sbjct: 484 TDRRTDRQTDRQTDRRT 500


>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 TDRQEFKPADGAVNLPEPRRTTPSSI 310
           T+R+   PA  ++NLP P   TPSS+
Sbjct: 542 TNRRTRIPAKPSLNLPSPPSKTPSSV 567


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 457 NELCACVCLSVCVRMCFY 404
           +E+CAC C+ VCV   +Y
Sbjct: 78  SEVCACTCVCVCVCGVYY 95


>SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 392 HKYTIKTHPYT-HRETYTRA 448
           H YT+ THPYT    TYT A
Sbjct: 18  HPYTMATHPYTMATHTYTMA 37



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 392 HKYTIKTHPYT-HRETYTRA 448
           H YT+ THPYT    TYT A
Sbjct: 60  HPYTMATHPYTMATHTYTMA 79



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 392 HKYTIKTHPYT-HRETYTRA 448
           H YT+ THPYT    TYT A
Sbjct: 81  HPYTMATHPYTMATHTYTMA 100


>SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 373 PPTPFARFSRQITNHYNTIIKNGGWRRAAGFG*INSAVRRFEFLS 239
           PPT  +R +R   +  +T ++  G R A GF  I+   ++   LS
Sbjct: 71  PPTGLSRLNRATLSVPSTSLRRQGRRPAPGFSFISDKTKKNRILS 115


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 353 TSEWRRRILKKNPHKYTIK-THPYTHRETY 439
           T ++  +   +  H+YT + THPYTH+ T+
Sbjct: 148 THQYTHQYTHQYTHQYTHQCTHPYTHQYTH 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,387
Number of Sequences: 59808
Number of extensions: 271010
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)