Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N10
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    40   8e-04
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    39   0.002
At1g77840.1 68414.m09070 eukaryotic translation initiation facto...    31   0.51 
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    30   0.68 
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    30   0.90 
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    29   1.2  
At4g01110.1 68417.m00149 hypothetical protein                          27   4.8  
At1g73200.1 68414.m08471 expressed protein                             27   4.8  
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ...    27   6.3  
At5g61390.1 68418.m07702 exonuclease family protein contains exo...    27   8.4  

>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 2   SEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
           +E+ IL W+R+  +SKG+  F+  ++ FV WL+ A
Sbjct: 373 AEDTILHWFRKGTNSKGRQTFVKSLEPFVNWLEEA 407


>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|P47823
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   SEEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
           +E+ IL WYR+  + KG+  F+  ++ FV WL+ A
Sbjct: 373 AEDTILHWYRKGTNPKGRQTFVKGLEPFVNWLEEA 407


>At1g77840.1 68414.m09070 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 437

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 5   EEVILKWYREPNSSKGKMMFL-DQMKKFVEWLQNA 106
           EEV+L WY +  +   K   +   +K FVEWLQ+A
Sbjct: 395 EEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSA 429


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 230  QTDRQEFKPADGAVNLPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILKKNPHKYT 403
            + D ++  PAD  ++LP+P+R+T        + M+ D +   +E    ++ +  HK T
Sbjct: 2364 EPDEEDEDPAD--IDLPQPQRSTREKEILQAVNMLGDANEVLNERAVVVMARMSHKLT 2419


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   EEVILKWYREPNSSKGKMMFLDQMKKFVEWLQNA 106
           E+VI++WY   N        L  +  F+EWLQNA
Sbjct: 402 EDVIVEWY---NKGVKSSPVLKNVTPFIEWLQNA 432


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 317 NCIIMISDLSRETSEWRRRILKKNP 391
           N ++ + DL +ET +W R IL+ +P
Sbjct: 254 NTVVPLEDLEKETVKWCREILRNSP 278


>At4g01110.1 68417.m00149 hypothetical protein
          Length = 265

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 469 FNRFNELCACVCLSVCVRMCFYCVFMWIFF--*NPPTPFARFSRQITNHYN 323
           ++R    C CVC++V + +    + + +FF   +P  P  R S    +++N
Sbjct: 58  WSRCRVFCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFN 108


>At1g73200.1 68414.m08471 expressed protein
          Length = 779

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 224 HRQTDRQEFKPA-DGAVNLPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILKKNPHKY 400
           +R+ DRQE   + D      +PR++   S+    +I I +L     +W +  L K   K 
Sbjct: 36  NRKRDRQESNSSSDPNFKSFDPRQSIDFSLNKQGVIWILELDENVKDWMKEKLPKEQKKK 95

Query: 401 TI---KTHP 418
            +   + HP
Sbjct: 96  RVDLLEVHP 104


>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 521

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +2

Query: 149 ISAASETDKARAVPSIILPQGY-IQTHRQTDRQEF-----KPADGAVNLPEPRRTTPSSI 310
           +SA + +  AR    +I+PQ + +   R     E      KP +G+++ P+P    PSSI
Sbjct: 270 VSAVTASPMARKPQPVIIPQEHSVAVSRSFTNPERRVSPPKPVNGSISPPKPITGKPSSI 329


>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 218 QTHRQTD--RQEFKPADGAVNLPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILKKNP 391
           QTHR  D  R  F+       +     + P  +  N +   +  + ETS  RRR +KK+P
Sbjct: 165 QTHRSLDDVRMNFEVLKYCATVLFLESSLPDELIENSV---TTTTPETSSRRRRTIKKSP 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,754
Number of Sequences: 28952
Number of extensions: 171551
Number of successful extensions: 524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)