Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N08
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 28 0.84
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 28 0.84
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 1.5
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c... 26 3.4
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 26 3.4
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 25 5.9
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 5.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 5.9
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 25 7.8
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 0.84
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 286 KTPDDKPGICVGLYNCEHITYMMLDKTRKSTMDYVRQSVCNGPE 417
+T D KP + V Y C+ Y + + R+ T ++ S C E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQKT--FLPMSECPSDE 231
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 0.84
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 316 HKFPVYRLESYKRLKWDSTP*VYYSHNHIVSLLKVSYPQLFCFYF 182
H FP YR Y + W +Y +H++ V L+ + CF F
Sbjct: 268 HVFPRYRFCFYGYVLWLCWCTMYLTHHYFVDLVGGMCLAIICFVF 312
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 184 NKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDDKPGI 312
++S T+ D+ L S Y ++P++C ++ C TP D G+
Sbjct: 162 SQSYTSIDR--LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202
>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 453 YFSRRXAAYAERFRTVTNGLSNVIHCTLSGLI 358
YFS++ A ERFR ++ G ++ C + L+
Sbjct: 81 YFSKQAAFCDERFRPISLGELALLECQIDLLV 112
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 152 YRDTQFPDSFLGVVQVCARIKF---TDINRIYETVEKIIILLLFIKYNS 15
YR +F +F V Q A++KF D++ +++ K +++ L Y++
Sbjct: 52 YRSARFYHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYST 100
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.0 bits (52), Expect = 5.9
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 73 LLISVNLIRAQTCTTPRNESGNCVSLYDCEPL-LNLFRNKSRTAEDKKLLGDSQCGYENN 249
++I+ +L Q R+E C + D + + +N + S KLLGD
Sbjct: 119 VVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAIFGYTKLLGDVPGCQAEY 178
Query: 250 IPMVCCPISNACKTPDDKP 306
I + I N CK PDD P
Sbjct: 179 IRVPFAEI-NCCKLPDDIP 196
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 457 DLFQPEXRSIR*TFPDRYKRIVERNPLYSFWSY 359
D +PE R+ R FP + NP YS+W Y
Sbjct: 545 DESKPERRTFR-KFPYPKHWDINLNPPYSYWLY 576
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 5.9
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +1
Query: 163 PLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDDKPGICVGLYNCEHI 342
P L K++ A+ +K S + P V +S+ TP KP I +
Sbjct: 251 PYDQLLAIKNQLAQLEKPASPSTSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSA 310
Query: 343 TYMMLDKTRKSTMDYVRQSVCNGPET--FSVCCGPPAEI-NPEDMTLNE 480
+ T YV GP++ +S+ GPPA + N +T E
Sbjct: 311 YSASVSSQPPLTHSYVHP----GPQSHKYSLSSGPPASLYNANALTPEE 355
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 341 ICSQLYKPTQIPGLSSGVLQAFEMGQHTIGIL 246
I Q+ KP +P L +GV+ A + +IG+L
Sbjct: 477 IQEQMAKPKNLPKLLTGVMAAISLLFISIGLL 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,296
Number of Sequences: 5004
Number of extensions: 40608
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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