Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N08
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   0.86 
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   27   8.0  

>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 226 SQCGYENNIPMVCCPISNACKTPDDKPGICVGLYNC 333
           S C   + IP +C P ++AC T DD    C+G   C
Sbjct: 528 STCPVMSRIPYMCNPTTHACDTDDD----CIGGAKC 559


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 179 SEIKAEQLRIRNF*ETHNVV-MRIIYLWCAVPFQTLVRLQTINREFVSV 322
           S+++A   R R +  TH ++ M +I+L+C  PF     + +   E  S+
Sbjct: 222 SQVQANTARYRKY--THTMIWMFVIFLFCYTPFMLTSAVASFGTETASI 268


>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 265  CPISNACKTPDDKPGICVGLYNCE 336
            C   N C+ P     +C G  NCE
Sbjct: 1436 CKCGNCCEMPQQIENVCCGKRNCE 1459


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 176 KFSK-GSQSYRDTQFPDSFLGVVQVCARIKFTDINRIYETVEKIIILLLFI 27
           +FSK G  +    Q PD  LG V   + +    INR+Y   +  ++ + F+
Sbjct: 234 EFSKNGQNTIEAVQNPDMELGSVNSLSAVDIMQINRLYNCPQARLLGVCFV 284


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 142  VSLYDCEPLLNLFRNKSRTAEDKKLLGDSQC 234
            + L D  P+L L+  +SRT     L GDS C
Sbjct: 1151 IKLQDDVPILGLYSPESRTHGRIALYGDSNC 1181


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 155 IVSLY*IYSEIKAEQLRIRNF*ETHNVVMRIIYLWCAVPFQ 277
           I  LY ++ ++ A Q+ I  F ET +   ++   W A PFQ
Sbjct: 5   IKRLYDVFLKVDATQVEINPFGETPDGKGKLFRSWKAQPFQ 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,045
Number of Sequences: 59808
Number of extensions: 298126
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)