Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N07
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0333 - 12541946-12542029,12544231-12544278,12545053-125451...    28   3.3  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   3.3  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.3  
12_02_0219 + 15822050-15824896                                         27   5.8  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.8  
01_05_0608 - 23628100-23631486                                         27   5.8  
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572...    27   7.7  

>05_03_0333 -
           12541946-12542029,12544231-12544278,12545053-12545158,
           12546943-12547046,12547127-12547264,12547395-12547799
          Length = 294

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 181 DRLMVERRKDPGSQ*QRVHYCRPMNTTIVHHVNSVCGSHGQYGEEEKHESFHCRIV 14
           D L+   +K    +  RVH C   + ++  ++N V   H    +++K E+ HC +V
Sbjct: 82  DGLLDACKKSVVKEHNRVHLCFKSSKSLKCNLNQVPVLHYLCLDDQKFETSHCHVV 137


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 151 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 261
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 286 SHHGREGCRIAWVDNWDD*NRR 221
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 3   DNSDTIRQ*KLSC-FSSSPYWPWLPXTEFTWWTIVV 107
           D  D +R+ ++ C F+  P WPWL     ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 244 YPPKRYDNPLARGGK 288
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>01_05_0608 - 23628100-23631486
          Length = 1128

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 367 FSNAFYINISFFGFGGNYQGSIKIFFSVTY 456
           F N  Y+N+S+ GFGG     I    S+ Y
Sbjct: 145 FKNLRYLNLSWAGFGGKIPSQIGNISSLQY 174


>07_03_1693 -
           28756331-28756435,28756558-28756664,28757114-28757245,
           28757412-28757478,28757553-28757635,28757824-28757905,
           28763101-28763177,28763278-28763361,28763443-28763512,
           28763625-28763713,28763801-28764487,28765700-28765997
          Length = 626

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = -2

Query: 253 WVDNWDD*NRRTPVQCLWVHNFR*DRLMVERRKDPGSQ*QRVHYCRPMNTTIVHHVNSVC 74
           W ++ D+   +  +Q  +V NFR    ++E+R         + +  P    +     S C
Sbjct: 192 WTNSNDECGAKCDMQMNFVRNFRGTAQVLEKRGYTQFTPHYITWYCPEAFVLSKQCRSQC 251

Query: 73  GSHGQYGEEEKHESFH 26
            +HG+Y   +  + F+
Sbjct: 252 INHGRYCAPDPEQDFN 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,080,366
Number of Sequences: 37544
Number of extensions: 227745
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)