Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N07
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)               28   3.4  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   3.4  
SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)                     27   6.0  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   7.9  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  

>SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)
          Length = 461

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 293 CLIKISDFKTRRNDD*SYNIFPIFNLVMPFISIFLFLVLVVITK 424
           C++ +  F+TRR    S N+F +  +      I+LF++L V TK
Sbjct: 151 CVMAVPKFETRRIK--SMNVFAVTAITSLLAYIWLFIILSVNTK 192


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 331 ISPSFKIAYLY--ETFTSHHGREGCRI-AWVD 245
           +S  F++A L   E + SH GREGC+   WVD
Sbjct: 71  LSLPFRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_59614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +1

Query: 1   QTTLTLFDNESFRVFLLRRIGHGCRXQSSRGGQ*WCSSDGNSEHVVIANPDPFFS---QP 171
           Q ++    N+   ++  +    GCR       + + +  G ++H+V+A+ + F+S     
Sbjct: 3   QLSIDKIGNKPLNMYQYKLFLCGCRVPQLNRDKYYVAPKGQAKHIVVAHRNQFYSVDVYD 62

Query: 172 SNG-PSGNYEPISTGPAFVDFNHPNYPP 252
           S G P G  E  +     V    P  PP
Sbjct: 63  SKGQPLGEPEIAAQLMKIVQNTEPEEPP 90


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/55 (20%), Positives = 28/55 (50%)
 Frame = +1

Query: 1    QTTLTLFDNESFRVFLLRRIGHGCRXQSSRGGQ*WCSSDGNSEHVVIANPDPFFS 165
            Q ++    N+   ++  +    GCR       + + ++ G ++H+V+A+ + F+S
Sbjct: 1441 QLSIDKMGNKPLNMYQYKLFFCGCRVPQLNRDKYYVAAKGQAKHIVVAHRNQFYS 1495


>SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)
          Length = 206

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/55 (20%), Positives = 28/55 (50%)
 Frame = +1

Query: 1   QTTLTLFDNESFRVFLLRRIGHGCRXQSSRGGQ*WCSSDGNSEHVVIANPDPFFS 165
           Q ++    N+   ++  +    GCR       + + ++ G ++H+V+A+ + F+S
Sbjct: 97  QLSIDKMGNKPLNMYQYKLFFCGCRVPQLNRDKYYVAAKGQAKHIVVAHRNQFYS 151


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 136 VIANPDPFFSQP-SNGPSGNYEPISTG 213
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 136 VIANPDPFFSQP-SNGPSGNYEPISTG 213
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 136 VIANPDPFFSQP-SNGPSGNYEPISTG 213
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,039
Number of Sequences: 59808
Number of extensions: 257959
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)