Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N07
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.53 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   2.8  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   4.9  
At3g54830.1 68416.m06074 amino acid transporter family protein b...    27   4.9  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.9  
At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    27   6.5  
At5g45520.1 68418.m05591 hypothetical protein                          27   8.6  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   8.6  
At1g09280.2 68414.m01038 expressed protein contains Pfam profile...    27   8.6  
At1g09280.1 68414.m01037 expressed protein contains Pfam profile...    27   8.6  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 136 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 285
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 148 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 279
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 169 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 270
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At3g54830.1 68416.m06074 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 546

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 356 PIFNLVMPFISIFLFLVLVVITKVQLKFS-FL*HIKQK 466
           P F LVM  I  FL +++ + T      S FL H+K+K
Sbjct: 477 PFFGLVMSLIGSFLTMLIFLDTDADTTASLFLEHLKEK 514


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 9   SDTIRQ*KLSCFSSSPYWPWLP 74
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 364 KNWENIIRLIIISPSFKIAYLYETFTSHH 278
           K ++ + R  I    FK+ +  E FTSHH
Sbjct: 710 KGYDRVRRTEIGKKHFKLTHFEEVFTSHH 738


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 367 IKNWENIIRLIII--SPSFKIAYLYETFTSHHGREGCRIAW 251
           +K+  N+ +L I     SFK+  L E+ T   G E  +IAW
Sbjct: 507 VKHLVNLRKLSITVNKYSFKVESLMESLTGLQGLESLKIAW 547


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 330 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 187
           F  +LK+L FM HL     E+V V   WI  +    +    +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509


>At1g09280.2 68414.m01038 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 575

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 364 KNWENIIRLIIISPSFKIAYLYETFTSHHGREGCRIAWVDNWD 236
           K  +NI  L+ I    ++ ++Y+T T   G    + AW+ + D
Sbjct: 372 KKLKNIAELVFIDAPHELQFIYQTATPPSGVCNKKFAWLVSSD 414


>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341)
          Length = 581

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 364 KNWENIIRLIIISPSFKIAYLYETFTSHHGREGCRIAWVDNWD 236
           K  +NI  L+ I    ++ ++Y+T T   G    + AW+ + D
Sbjct: 378 KKLKNIAELVFIDAPHELQFIYQTATPPSGVCNKKFAWLVSSD 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,015,059
Number of Sequences: 28952
Number of extensions: 183738
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)