Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N05
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 29 0.36
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 28 0.63
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.5
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 1.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.9
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 1.9
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 2.5
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 2.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 4.5
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 4.5
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 4.5
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 25 5.9
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 5.9
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 25 5.9
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 7.8
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.8
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 25 7.8
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 29.1 bits (62), Expect = 0.36
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +3
Query: 6 PQENDSSCEQSSLLTELSLDAFDNTKSDNDIDDGNSPFIPTSDELPVLEPAVMWGALPDS 185
P END++ ++ L+E S + ++ S+N TSD+L ++ + + D+
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENS---------DTSDDLTKVD-SPNKSLVNDN 400
Query: 186 VSLARPQPSETHNVSPAPALQRLLTAST---TGPPPQD 290
VS + SE P Q L+T ST G P D
Sbjct: 401 VSAKHDKESENGKSKFPPPSQTLVTTSTISAAGNEPSD 438
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 28.3 bits (60), Expect = 0.63
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 9 QENDSSCEQSSLLTELSLDAFDNT-KSDNDIDDGNSPFIPTSDELPVLEPAVMW--GALP 179
QEN + LT+ S+ + T +S++ + SP +P+SD LP+L + P
Sbjct: 436 QENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSPLLPSSDRLPLLRQSQFTPPPKKP 495
Query: 180 D-SVSLARPQPSETHNVSPAPALQ 248
+ V++ P+ S+ H + P P ++
Sbjct: 496 NFEVAIISPKKSQ-HKLYPNPVVE 518
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 118 KGEFPSSISLSDFVLSNASKDNSVNNDD 35
K P+SI +SDF +N + D S N ++
Sbjct: 304 KSSSPTSIEISDFSKNNENHDQSENKEE 331
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 12 ENDSSCEQSSLLTELSLDAFDNTKSDNDIDD 104
E+D C Q SL T++ +A D S ++ID+
Sbjct: 410 EDDIVCFQGSLWTQIDKNALDYNDSADNIDE 440
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 ENDSSCEQSSLLTELSLDAFDNTKSDNDIDDGNS 113
E+DSS + S +E S + D+T S +D D +S
Sbjct: 280 EDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSS 313
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 165 WGA--LPDSVSLARPQPSETHNVSPAPALQRLLTASTTGPPPQDLV 296
WGA L D +S Q ++ HN +PAPA + ++ PP++L+
Sbjct: 347 WGARGLDDIISQLMEQ-AQGHN-APAPAPEDVIAKMKVQKPPKELI 390
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 3 EPQENDSSCEQSSLLTELSLDAFDNTKSDNDIDDGN 110
+P+ + SS EQSSL T S D D DID N
Sbjct: 201 DPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNN 236
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 48 TELSLDAFDNTKSDNDIDDGNSPFIPTSDELPVLEPAVMWGALPDSV 188
T L L D + +G +P++ S L +L A++W D++
Sbjct: 99 TSLILMRLDEVDGPHPPAEGRAPYLTLSQNLGLLVGAMVWSLSADTI 145
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 163 MTAGSNTGSSSLVGIKGEFPSSISLSDFVLSNASKDNSVNNDDCSHDESF 14
+ A N S+ G+K F +++SL + V S NS DD ++ E F
Sbjct: 127 LDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECF 176
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 169 PHMTAGSNTGSSSLVGIKGEF 107
P MTA +N GS S G GE+
Sbjct: 247 PSMTASANAGSISQAGPDGEY 267
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +3
Query: 12 ENDSSCEQSSL------LTELSLDAFDNTKSDNDIDDGNSPFIPTSDELPVLE 152
END S +QS L++LS+++ S D D+ NS F +S P++E
Sbjct: 620 ENDKSLKQSPFQKLTRRLSDLSVNSSGQI-SKQDFDNSNSIFSESSLSSPIIE 671
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 259 RHRRRDHPHRIS*RTYTQI 315
R+RRRD H+I +TY +I
Sbjct: 225 RNRRRDRAHKIMQKTYLKI 243
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 277 HPHRIS*RTYTQINASILTRTRLHARDXRSQNSDEAKNQRT 399
HP + NA + RT+L+++ R D+AKN T
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAST 296
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 5.9
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 175 CQTALVLHDPNLRKRIMYRRHRLY--NVYSRHRRRDHPHRIS*RTYTQINASILTRTRLH 348
CQ V L KRIM + R+Y NV + + +I + +I ++ +
Sbjct: 46 CQLDKVAEPQGLSKRIMDLQGRIYDLNVTMEKKLKIEEKKIKSKQEKEIAHALQSIQERE 105
Query: 349 ARDXRSQNSDEAKNQRTFVAKRA 417
R+ + ++ EA N + +R+
Sbjct: 106 LRERQQMSNVEASNAQLLTNQRS 128
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 277 HPHRIS*RTYTQINASILTRTRLHARDXRSQNSDEAKNQRT 399
HP + NA + RT+L+++ R D+AKN T
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAST 296
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.6 bits (51), Expect = 7.8
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 141 PVLEPAVMWGALPDSVSLARPQPSETHNVSPAPALQRLLTASTTGPPPQDLVKNIYSNQR 320
P+ AV A+ V+ A P P+ T V P + ++ + PP L S
Sbjct: 712 PMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPM 771
Query: 321 VYIDQNASP 347
Y+ Q SP
Sbjct: 772 NYVSQPESP 780
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 9 QENDSSCEQSSLLTELSLDAFDNTKSDNDIDDGNSPF 119
+ N +S ++ L + + + DNT SD + D G +
Sbjct: 50 ESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSY 86
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 136 SSLVGIKGEFPSSISLSDFVLSNASKDNSVNND 38
S +V GEF + + +D++ N S+ N V +
Sbjct: 26 SKIVNFGGEFTNDAAKADYIFVNYSQINRVRRE 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,909
Number of Sequences: 5004
Number of extensions: 38829
Number of successful extensions: 174
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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