Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N05
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    30   0.70 
At3g07660.1 68416.m00918 expressed protein                             30   0.92 
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea...    29   1.6  
At1g31814.1 68414.m03906 expressed protein                             28   2.8  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   3.7  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    28   3.7  
At1g66430.1 68414.m07546 pfkB-type carbohydrate kinase family pr...    28   3.7  
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    27   4.9  
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro...    27   4.9  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    27   6.5  
At3g02440.1 68416.m00231 expressed protein                             27   8.6  
At1g30280.1 68414.m03703 expressed protein contains low similari...    27   8.6  
At1g18150.2 68414.m02253 mitogen-activated protein kinase, putat...    27   8.6  
At1g18150.1 68414.m02252 mitogen-activated protein kinase, putat...    27   8.6  
At1g07120.1 68414.m00757 expressed protein                             27   8.6  

>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 108 NSPFIPTSDELPVLEPAVMWGALPDSVSLARPQPSETHNVSPAPALQRLLTASTTGPP 281
           +SP  P++D  P  + +    A P     A P PS   + SP PAL  L  A  + PP
Sbjct: 7   SSPPAPSADSAPPPDTSSDGSAAPPPTDSA-PPPSPPADSSPPPALPSLPPAVFSPPP 63


>At3g07660.1 68416.m00918 expressed protein
          Length = 841

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 169 PHMTAGSNTGSSSLVGIKGEF-PS--SISLSDFVLSNASKDNSVNNDD 35
           PH   G+NTG+ + VGI G + P+  S        S AS  NS +N+D
Sbjct: 682 PHYKPGTNTGNMTHVGITGGYGPTYGSFPAGYNPTSAASAGNSTSNED 729


>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
           family protein contains 8 WD-40 repeats; similar to
           JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
          Length = 1026

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = -1

Query: 289 SCGG--GPVVDAVSRRCKAGAGDTLCVSEGWGRA-RLTLSGRAPHMTAGSNTGSSSLVGI 119
           SCG    P    V+R C  G   T C  +G  R   L          A SN   SS  GI
Sbjct: 306 SCGNMHSPTAACVARGCSEGVSFTTCSEDGTIRLWDLAFQVNPLEANASSNPSESSTQGI 365

Query: 118 KGEFPSSISLSDFVLSNASK 59
                + I   D V +  SK
Sbjct: 366 MHLASAGIFERDLVETCGSK 385


>At1g31814.1 68414.m03906 expressed protein
          Length = 473

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 114 PFIPTSDELPVLEPAVMWGALPDSVSLARPQPSETHNVSPAPALQRLLTASTTG---PPP 284
           P +PT  ++  + P  +  ++   V++    P       PAPA + +     TG   PPP
Sbjct: 405 PLLPTPSQILQVNPYGLLSSILPGVAVPYGNPRALFGSVPAPASRPVFYVQQTGYGMPPP 464

Query: 285 Q 287
           Q
Sbjct: 465 Q 465


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 114 PFIPTSDELPVLEPAVMWGALPDSVSLARPQPSETHNVSPAPALQRLLTAS-TTGPPPQD 290
           P IPT   LPVL P      + +  SL  P PS    + P P L  +       G PP  
Sbjct: 328 PTIPTLPPLPVLPPV----PIVNPPSLPPPPPSFPVPLPPVPGLPGIPPVPLIPGIPPAP 383

Query: 291 LVKNI 305
           L+  I
Sbjct: 384 LIPGI 388


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 23/79 (29%), Positives = 30/79 (37%)
 Frame = +3

Query: 57  SLDAFDNTKSDNDIDDGNSPFIPTSDELPVLEPAVMWGALPDSVSLARPQPSETHNVSPA 236
           SL+      SD+   +  +P     D LP+  P       P   SL  P PS      P 
Sbjct: 33  SLEIIIGGGSDSTNYNSPAPSPEPEDYLPLPPPPQTPPPPPPPQSLPPPSPSPEPEHYPP 92

Query: 237 PALQRLLTASTTGPPPQDL 293
           P     +T S   PPP+ L
Sbjct: 93  PPYHHYITPSP--PPPRPL 109


>At1g66430.1 68414.m07546 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 384

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 142 GSSSLVGIKGEFPSSISLSDFVLSNASKDNSVNNDDCSHD 23
           GSS+ +G  GE         ++L+N  KDN+VNND    D
Sbjct: 111 GSSAFIGKVGEDEFG-----YMLANILKDNNVNNDGMRFD 145


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 265 RRRDHPHRIS*RTYTQINASILTRTRLHARDXRSQNSDEAKN 390
           RRR+     S R Y Q+ +SILTR RL  R   + N  EAK+
Sbjct: 752 RRRNEAQAAS-RWY-QLLSSILTRERLKNRYANNSNDVEAKS 791


>At5g07770.1 68418.m00889 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 722

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 201 PQPSETHNVSPAPALQRLLTASTTGPPP 284
           P PS +    P P    +L AS T PPP
Sbjct: 641 PPPSMSGGAPPPPPPPPMLVASRTAPPP 668


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 21/80 (26%), Positives = 32/80 (40%)
 Frame = +3

Query: 108 NSPFIPTSDELPVLEPAVMWGALPDSVSLARPQPSETHNVSPAPALQRLLTASTTGPPPQ 287
           NS   P S  LP   P++   + P S++   PQPS +  ++P+P      +   + P P 
Sbjct: 50  NSTSPPPSSPLP---PSLPPPSPPGSLTPPLPQPSPSAPITPSPPSPTTPSNPRSPPSPN 106

Query: 288 DLVKNIYSNQRVYIDQNASP 347
               N  S        N  P
Sbjct: 107 QGPPNTPSGSTPRTPSNTKP 126


>At3g02440.1 68416.m00231 expressed protein
          Length = 373

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 151 SNTGSSSLVGIKGEFPSSISLSDFVLSNASKDNSVNN--DDCSHDESFS 11
           SN+ SSS +     +  S S SD   +  S+ +S +N  DD  HD   S
Sbjct: 45  SNSSSSSAISSPSRYNHSSSSSDSYKTEDSEPSSYDNDYDDTYHDPKSS 93


>At1g30280.1 68414.m03703 expressed protein contains low similarity
           to cyclin G-associated kinase GI:1902912 SP|P97874 from
           [Rattus norvegicus]
          Length = 455

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 3   EPQENDSSCEQSSLLTELSLDAFDNTKSDNDIDDGNS 113
           E +E++   E SS + E++ D FD  + +     GNS
Sbjct: 272 EDEEDEEEEEMSSYVIEINSDRFDRYREEGGGGGGNS 308


>At1g18150.2 68414.m02253 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 348 RARSAVSKQ**SEEPENLCG*TCKNVGPSASVSG 449
           RA +AV+    SEE +N  G + +N+  SAS+SG
Sbjct: 518 RAAAAVASTLESEEADNGGGYSARNLMKSASISG 551


>At1g18150.1 68414.m02252 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 348 RARSAVSKQ**SEEPENLCG*TCKNVGPSASVSG 449
           RA +AV+    SEE +N  G + +N+  SAS+SG
Sbjct: 518 RAAAAVASTLESEEADNGGGYSARNLMKSASISG 551


>At1g07120.1 68414.m00757 expressed protein
          Length = 392

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 177 PDSVSLARPQPSETHNVSPAPALQRLLTASTTGPPP 284
           P+SV  +  +  E  N +P P +Q   TA+   PPP
Sbjct: 81  PESVK-SNTKGQEVRNPNPKPTIQGQSTATKPPPPP 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,281
Number of Sequences: 28952
Number of extensions: 214320
Number of successful extensions: 828
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)