Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N04
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    26   3.1  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   3.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   7.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.4  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 335 DPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 484
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 409 IRLQVMLECVNVTH-NPAI*LIECRVSKCGLVKVKRTGHEGVLVEWF 272
           I  Q  L+ +  TH NP    +EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNP----VECDISRCPLNACKIAGQETELADLF 275


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 353 LYXRIVGYINAFKHYLKP----YPQEKLHFVGVKINDVVVEKL 469
           +Y +++G +N F+  ++     Y   +   + VKI+ +VV+KL
Sbjct: 385 VYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKL 427


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +3

Query: 255 ARCSTLNHSTSTPSCPVRLTFTKPHFETLHSISYXAGLWVTLTHSSIT*SLILKRNFISS 434
           ++ ST N ++++ S  + LT  K    T  +    +   V+L  SS   SLI+    ISS
Sbjct: 514 SQLSTENFTSASSS--LSLTNAKSSLSTPSTTIPTSNSSVSLQTSS---SLIISSPIISS 568

Query: 435 ALKSMMLSLRN*SHSLTXAN 494
           +L +   S    +HS+T +N
Sbjct: 569 SLTATSTSTPALTHSITPSN 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,254
Number of Sequences: 5004
Number of extensions: 42520
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)