Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N04
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   3.1  
06_03_1399 + 29892993-29893154,29894819-29895132,29895227-298953...    28   5.4  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.5  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 239 LSLAMCSVQHPKPFDKHTFMPSALDFYQTALRDPAFYQLYXRIVG-YINAFKHYLKPYPQ 415
           L  ++C +   K    H    S  DF +     P F +L+  I   Y+     ++KPY  
Sbjct: 625 LLASLCKLSSYKLQSLHIIDHSTDDFLERWFPIPCFLRLFHMITDYYLLQLPKWVKPY-L 683

Query: 416 EKLHFVGVKINDVVVEKLVTFFD 484
            K+ ++ + + ++  E + T  D
Sbjct: 684 TKMAYLSINLREIKKEDMETLGD 706


>06_03_1399 +
           29892993-29893154,29894819-29895132,29895227-29895319,
           29895424-29895514,29895791-29895884,29896161-29896255,
           29896432-29896501,29896612-29896691,29897145-29897261,
           29897566-29897642,29897907-29898432
          Length = 572

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 2   TRLKAGHYIYTA*ELQAYVLDILKRLRQSLQKGKFESYGKKIDFHDE 142
           TR++  HY   A + + Y+LD++  L   + + K   YG K   HD+
Sbjct: 412 TRVQTLHYADKA-KTEQYMLDLVVLLHHLVVQVKNRGYGSKSSKHDQ 457


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 377 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYXQ 493
           IN+ ++ L PY    L F+G    DVV+ + +T F + Q
Sbjct: 639 INSLQNSLNPYHLRYLEFIGA-YGDVVLPQALTSFYHLQ 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,280
Number of Sequences: 37544
Number of extensions: 255923
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)