Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N04
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27456| Best HMM Match : Ank (HMM E-Value=2.2e-20) 34 0.084
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_16923| Best HMM Match : Ribosomal_L37e (HMM E-Value=5.7) 32 0.34
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 31 0.59
SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13) 30 1.4
SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 27 9.6
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) 27 9.6
>SB_27456| Best HMM Match : Ank (HMM E-Value=2.2e-20)
Length = 452
Score = 33.9 bits (74), Expect = 0.084
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 RGSRPDTTSTQRKNYKHTFWTF*KDFVSPY-RKANSNRMARKLISTMNRPLTL 158
R + T T++ K TFW + + VSP RK+ S M R +IS + +TL
Sbjct: 6 RTRKKKTNPTEKVTPKRTFWRYVVEVVSPRGRKSKSRDMKRNIISPRDISITL 58
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 305 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 484
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 485 YXQ 493
Y Q
Sbjct: 240 YGQ 242
>SB_16923| Best HMM Match : Ribosomal_L37e (HMM E-Value=5.7)
Length = 69
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 192 YEERSYNRIIQRIL*NCRSPCARCSTLNHSTSTPSCPV 305
+E+RS + +L C S C RC L+H S PSC +
Sbjct: 15 HEKRSTKFMADVLLRECYS-CRRCGDLHHKHSNPSCAI 51
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 146 PVHRGNQFSCHTIRICLSVGTDEVFSKCPERMLVVLTLCRCSVRP 12
P H NQ C IC+ G + KCP + + RC++ P
Sbjct: 245 PCHEANQGGCEGRAICVYTGPGKSICKCPPGYKLDESQARCTLCP 289
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 31.1 bits (67), Expect = 0.59
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 STLNHSTSTPSCPVRLTFTKPHFETLH-SISYXAGLWVTLTHSSIT*SLILKRNFISSAL 440
STL H T T S T T H H +++Y TLTHS++T S + S +
Sbjct: 60 STLTHLTITYSTITHSTLT--HLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTI 117
Query: 441 KSMMLSLRN*SH 476
L+ N +H
Sbjct: 118 THSTLTHSNLTH 129
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 264 STLNHSTSTPSCPVRLTFTKPHFETLHSISYXAGLWVTLTHSSIT*SLILKRNFISSALK 443
S L HST T S L T T ++++ + TLTH +IT S I L
Sbjct: 25 SNLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLT 83
Query: 444 SMMLSLRN*SHS-LTXANLMPLTV 512
+ L+ +HS LT + L T+
Sbjct: 84 HLTLTYSTLTHSTLTHSTLTHSTL 107
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 264 STLNHSTSTPSCPVRLTFTKP---HFETLH-SISYXAGLWVTLTHSSIT*SLILKRNFIS 431
STL H T T S LT T H H ++++ + TLTHS++T S +
Sbjct: 50 STLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTH 109
Query: 432 SALKSMMLSLRN*SHS 479
S L ++ +HS
Sbjct: 110 STLTHSTITHSTLTHS 125
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 372 VTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTXANLMPLTV 512
+TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 10 LTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)
Length = 732
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 114 MARKLISTMNRPLTLSETIGKRTPXLYEERSYNRIIQRI 230
+A KL+++ P L+ET+ K + +RSY R++Q +
Sbjct: 207 IAAKLVTSGFNPKMLAETMKKDLYRVLNQRSYQRVVQTV 245
>SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 146 PVHRGNQFSCHTIRICLSVGTDEVFSKCPERMLVVLTLCRCSVRP 12
P H N+ C IC+ G + +CP + + RC++ P
Sbjct: 279 PCHGANRGGCEGRAICVYTGPGKSICRCPASYKLDESQARCTLCP 323
>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 286 LVEWFRVLHRAHGERQFH 233
L+E RV+H+A GER FH
Sbjct: 270 LLEKTRVVHQAEGERNFH 287
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 65 ILKRLRQSLQKGKFE-----SYGKKIDFHDEQAINFVGNYWQENADXV--*REKLQQDYS 223
++ + L+KGKF+ S K ID E+ F+G+ W ++ D + +EK+++
Sbjct: 1085 VINEIDSILEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKET-Q 1143
Query: 224 TNLMK 238
T L K
Sbjct: 1144 TKLTK 1148
>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
Length = 546
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 286 LVEWFRVLHRAHGERQFH 233
L+E RV+H+A GER FH
Sbjct: 154 LLEKSRVVHQAKGERNFH 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,444
Number of Sequences: 59808
Number of extensions: 320434
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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