Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N04
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15510.1 68418.m01816 expressed protein                             27   5.9  
At2g10440.1 68415.m01097 hypothetical protein                          27   5.9  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   7.9  
At2g27220.1 68415.m03271 homeodomain-containing protein                27   7.9  
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    27   7.9  

>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +2

Query: 122 KIDFHDEQAINFVGNYWQENADXV*REKLQQDYSTNLMKLSLAMCSVQHPKPFDKHTFMP 301
           + D+   + ++F+  Y  E      ++KL ++    + +L   +     P P+    F+P
Sbjct: 397 EFDYQVAEKMSFIEQYKMERER---QQKLAEE--EEIRRLRKELVPKAQPMPYFDRPFIP 451

Query: 302 SALDFYQTALRDPAFY 349
                + TA RDP F+
Sbjct: 452 RRSSKHPTAPRDPKFH 467


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +2

Query: 77  LRQSLQKGKFESYGKKIDFHDEQAINFVGNYWQENADXV*REK-------LQQDYSTNLM 235
           LRQ +     E + +K   H+E  IN + + ++EN   +  +K       LQQ+  +NL 
Sbjct: 33  LRQKVLSKIVEKFKEKFHAHEEYKINDIASKFEENFYSIATDKTTTSQQWLQQNTQSNLC 92

Query: 236 KLSLAMCSVQHPKPFDK 286
            +  A     +   F K
Sbjct: 93  VICFAKSGPYNRSRFSK 109


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
 Frame = +2

Query: 137 DEQAINFVGNYWQENADXV*RE--------KLQQDYSTNLMKLSLAMCSVQHPKPFDKHT 292
           D Q    +G +W  N   V  +         +   Y+ N     L  CS +       ++
Sbjct: 157 DRQTALMLGEWWNANPVDVINQATRTGAAPNISDAYTINGQPGDLYNCSTKETVVVPINS 216

Query: 293 FMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVV 460
              S L     AL  P F+ +    +  + A   YLKP+  + L     +  DV++
Sbjct: 217 GETSLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLL 272


>At2g27220.1 68415.m03271 homeodomain-containing protein 
          Length = 431

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 165 TIGKRTPXLYEERSYNRIIQRIL*NCRSPCARCSTLNHSTSTPSCPVRLTFTKPHFETLH 344
           T G  +   Y   + N     IL   R       T   ++S+ SC V + FTK H    +
Sbjct: 313 TKGSSSKQPYNNTTSNESSNTILPAFRQGFTETETPRQNSSS-SCSVVMRFTKQHMNQAN 371

Query: 345 SISYXAGL--WVTLTHSSIT*SL 407
            I++  G   + T+  +S++ SL
Sbjct: 372 FINFNGGFENYHTMDGNSVSLSL 394


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1420

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 75   DFVSPYRKANSNRMARKLISTMNRPLTLSETIGKRTPXLYEERSYNRII 221
            DF   YR +N  +  ++LI  +++P  +++ I    P  Y +  Y++ +
Sbjct: 1100 DFAEIYRNSNLCQRNKELIEVLSKPSNIAKEI--EFPTRYSQSLYSQFV 1146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,799
Number of Sequences: 28952
Number of extensions: 214059
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)