Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N03
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 40 0.002
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 35 0.036
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016) 31 0.44
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1) 28 5.4
SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6) 28 5.4
SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_45283| Best HMM Match : SSF (HMM E-Value=0) 27 7.2
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 121 NGVHLSPEYLKLNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARA 291
N + +PE+L +NP VP++V N V ES + I ++ + + P+D RA
Sbjct: 293 NPYNKTPEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 35.1 bits (77), Expect = 0.036
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +1
Query: 154 LNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARAKVDYILD 312
L+P +T+P+L + S IIRYLA+ + LY DL R +VD LD
Sbjct: 43 LSPFNTLPLLETKEGTFFSSNTIIRYLAA---SSDKLYGSDLFQRGQVDQWLD 92
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 223 IRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSLF 333
I Y+A++YGE +N Y E A Y++ D +L+
Sbjct: 2092 ISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 2128
>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
Length = 583
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 223 IRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSLF 333
I Y+A++YGE +N Y E A Y++ D +L+
Sbjct: 178 ISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 214
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 230 YLMITRDSATQKSLSTRIGTVC-CGLSFKYSGERCTPLAKSTTILFILRSNIAAVNSTVL 54
++M+ RDS + + ST+ TV +S + E C A STT L SN + VN T L
Sbjct: 30 HVMLRRDSVLENN-STQNSTVNNSSISCNGTKEECNETANSTT---FLTSNASHVNLTKL 85
Query: 53 QGGEAS 36
G +S
Sbjct: 86 CAGNSS 91
>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 223 IRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSL 330
I Y+A++YGE++N Y E A Y + D +L
Sbjct: 32 ISYIANRYGEDNNEYMESYDETAPSKYAMYLDANNL 67
>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = -1
Query: 281 WRSSGYRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCGLSFKYSGERCTPLAK---- 114
WRS+ Y L +P++L + L D ++ I F SG+ +AK
Sbjct: 47 WRSTKY--LTTPFVLNELLTEPVDLKEKQKEEVFITDYQNSPQFHVSGKLGAKIAKDLGI 104
Query: 113 --STTILFILRSNIAAVNSTVLQ 51
STT F+++ NI AVN T ++
Sbjct: 105 DVSTTDSFVVKMNIGAVNKTEIR 127
>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
Length = 613
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 133 LSPEYLKLNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARAKVDYILD 312
L PE ++L + + F +R I Y+ ++YG +N Y E +A Y++
Sbjct: 490 LQPEDIRLELMTDIDMF---QFIEKGTRGGISYIVNRYGNANNKYIESYDEQAPSKYVMY 546
Query: 313 FDLGSLF 333
D +++
Sbjct: 547 LDADNVY 553
>SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)
Length = 653
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 220 IIRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSLFQ 336
I+RYL K+G+ +L ED + R +D ++ S+ Q
Sbjct: 227 ILRYLVRKFGDRIDLSIEDWKNRTAMDVAVNKGASSIVQ 265
>SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 223 IRYLASKYGENSNLYPEDLQARAKVDYILDFDLGSLF 333
I Y+A++Y + +N Y E A Y++ D +L+
Sbjct: 194 IPYIANRYSKANNKYMESYDETAPSKYVMYLDANNLY 230
>SB_45283| Best HMM Match : SSF (HMM E-Value=0)
Length = 425
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 115 FANGVHLSPEYLKLNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPE 273
FA + +P +L + P +L + A+S R+ +K+G +N YP+
Sbjct: 227 FAGFLKATPMFLMVMPGMISRVLFPDSIACADSVSCERHCGNKWGCTNNAYPK 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,166
Number of Sequences: 59808
Number of extensions: 302273
Number of successful extensions: 666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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