Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N01
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.3  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 181 GHYGFHVHEKGDISG 225
           G YG H H+ G ++G
Sbjct: 9   GFYGSHHHQSGSVAG 23


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
 Frame = -3

Query: 501 PQA---TRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVNAEM 367
           PQA    RP         GW V P  S  +      P IP AP  A +
Sbjct: 48  PQAILQVRPSTSAAADVDGWQVTPLPSDGTTSPEPDPEIPVAPEPAPL 95


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 77  LSPIWSGRTSEAILR 121
           L P+W G  SEA+ R
Sbjct: 220 LPPVWQGGESEALAR 234


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 510 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVNA 373
           P TP A     +    + G  V  KS++ + RTT +      P  A
Sbjct: 416 PSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPA 461


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 169 GLPPGHYG 192
           G+PP HYG
Sbjct: 59  GIPPHHYG 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,135
Number of Sequences: 336
Number of extensions: 2989
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)