Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N01
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    76   4e-15
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.34 
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    29   0.59 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   3.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.2  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   3.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.2  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.3  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
 Frame = +1

Query: 73  RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 243
           RA+A L G++ + G +TF ++  + +V V   +VG       GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 244 SHFNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
            HFNPE K HG  +   RHVGDLGN E D   + K    D  + ++
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLF 108



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +2

Query: 368 ISAFTGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVIGI 514
           IS F GA+ I+GR +V+H   DD G+    +S KTGNAG R ACGVIGI
Sbjct: 105 ISLF-GANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 507 MTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVNAE 370
           +TP   +PPA PV  E+    +P ++  +    + P+ P APV  E
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPE 555



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 513 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVNAE 370
           +P  P   + PA+PV  E+    +P  +  +    ++P+ P APV  E
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPE 600



 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 513 IPMTPQATRPPALPVFLESG 454
           +P  P   +PPA+PV  E+G
Sbjct: 673 VPEVPSVPQPPAVPVVPEAG 692


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 375 HLPEHTGFSAGLWFYTSGLMISAALTTQIREKPAT 479
           HLP+   F+ G  F  +GL     L  Q++ KP T
Sbjct: 133 HLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGT 167


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 97  ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 273
           EN+   +  TR+ DGK  V      +  G + F  H+  ++    G   S+F+ E  + H
Sbjct: 30  ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88

Query: 274 GHPSDENRHV 303
            + SDE+ +V
Sbjct: 89  RNDSDESENV 98


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 298 HVGDLGNAEFDQNYSSKIDMIDPHLGIYRSTRDSR 402
           HV + GN  FD  + S + ++D  L  +   +  R
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSELKSWLKAQKKR 136


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 247 HFNPENKEHGHPSDENRH 300
           H N  + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 179 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 90
           GGS    P S + +PS S VN+  PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 259 ENKE-HGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGI 378
           ENK  HG   D+     D  + E  + Y+SKI+ ID  + I
Sbjct: 85  ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 238 TGSHFNPENKEHGHPSDENRHVGDLGN 318
           T  + +PE+   G PSD N     LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 507 MTPQATRPPALPVFLESGWSVRPKSSARS 421
           +TP+  R   LP F    WS R  S  RS
Sbjct: 685 VTPEYLRTDVLPEFFHCFWSRRMASDRRS 713


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 375 HLPEHTGFSAGLWFYTSGLMI-SAALTTQIREKPAT 479
           H+P  T  + G ++Y +  ++ S A  T+ RE  AT
Sbjct: 366 HIPRSTSENTGTYYYANNRLVESQAQFTKNREATAT 401


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 165 DRSFYVDLAVRQPSERNIASDVLP 94
           D S Y+  ++  PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 459 IREKPATLVDASPAVSSEYCKTSLYLFIF 545
           + EK   L D S       CKTS+Y+ +F
Sbjct: 119 VLEKLLLLQDYSSWTHGNSCKTSIYILLF 147


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
 Frame = +1

Query: 85  HLVGENI-RGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNP- 258
           ++ G N+   NIT+ +L    ++++ S        YG  +  +GD    C     + +P 
Sbjct: 242 YVAGANMDENNITYVKLGANPIYLDDSYWSTVKPTYGLALECEGDT---CSGLPCYVDPR 298

Query: 259 ENKEHGHPSDENRHVGDLGN----AEFDQNYSSKIDMID 363
           EN   G P  E   +G  G       F Q  ++KI ++D
Sbjct: 299 ENGVQGCP--EGSPIGAGGACFCVVGFQQGTTAKIVVVD 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,287
Number of Sequences: 5004
Number of extensions: 47606
Number of successful extensions: 128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)