Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N01
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 4e-19
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 51 5e-07
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 30 1.1
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34) 30 1.4
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 1.9
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2) 29 3.3
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 29 3.3
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 28 4.3
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12) 28 4.3
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_30440| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_30246| Best HMM Match : IspA (HMM E-Value=0.39) 27 7.6
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 LPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVG 306
+ +GK + G+I GL G++GFH+H GD + GC S G HFNP KEHG PSDENRHVG
Sbjct: 22 MAEGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVG 81
Query: 307 DLGNAEFDQNYSSKIDMID 363
DLGN + + IDM D
Sbjct: 82 DLGNVVAGDDGKACIDMTD 100
Score = 64.9 bits (151), Expect = 4e-11
Identities = 27/44 (61%), Positives = 34/44 (77%)
Frame = +2
Query: 383 GAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVIGI 514
G H ++GR+VV+H DD GR H DS+ TG+AGGR+ACGVIGI
Sbjct: 107 GEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 395 ILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVI 508
I+GRA+V+H DD GR H S+ TGN+G RV CG+I
Sbjct: 30 IIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 271 HGHPSDENRHVGDLGNAEFDQNYSSKIDMID 363
HG P D++RH+GDLGN E D N + + + D
Sbjct: 2 HGAPEDKDRHLGDLGNIEADANGIADVSITD 32
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 181 GHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDL-GNAEFDQNYSSKIDM 357
G Y H H G I G S+ + + N+ E+ V D+ GNA F ++ + +++M
Sbjct: 2086 GRYPIHFHMMGSIKGSYSSSRRYLHGVNE----AVVEHNVVYDIKGNAVFMEDGAEELNM 2141
Query: 358 IDPHLGIY 381
+ +LGI+
Sbjct: 2142 VIYNLGIF 2149
>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
Length = 722
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 381 PEHTGFSAGLWFYTSGLMISAALTTQIREKPATLVDASPAVSSEY 515
PE + F LW+Y SGLMI+ ++ + E D S ++Y
Sbjct: 165 PEKSFFGL-LWYYVSGLMIALSIACTVAETIPPPCDESVICGAQY 208
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 109 GNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDI-----SGGCGSTGSHFNPENK 267
G ITFTRLP +V V L + FHV E +I + G + GSH N +NK
Sbjct: 560 GLITFTRLPPSQVQVFEGTHNLSL-TWSFHVVEGENIFTLSFNRGENTIGSHSNDDNK 616
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 233 PQPPDMSPFSWTWNP*WPGGSPTIDPSTWTLPSGSRVNVILPLMFSPT 90
P P MSP S +++P PG SP+ PS+ P+ + P +SPT
Sbjct: 421 PSSPSMSPASPSYSPTSPGYSPS-SPSSGYSPASPSYSPTSP-SYSPT 466
>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
Length = 508
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 169 GLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRH 300
G P YG H G S G G + + + +GHPS H
Sbjct: 317 GHPSTRYGPHSTRYGHPSTGYGHPSTRYGHPSTRYGHPSTRYGH 360
>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
Length = 380
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHL 372
F PE E DEN GD+ N + D Y ++ DP L
Sbjct: 333 FYPEFDEEDDDDDENEFEGDMANGD-DHFYEDFLEAEDPAL 372
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 510 PMTPQATRPPALPVFLESGWSVRPKSS 430
P TP A RP P+ G+ +RP+S+
Sbjct: 1489 PATPTAVRPRGSPIRARGGFCLRPESA 1515
>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
Length = 1114
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 394 PVCSGKCRDAGRSYQSCW 341
P CSG CRD YQ W
Sbjct: 1054 PACSGTCRDQFLGYQVAW 1071
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/85 (24%), Positives = 32/85 (37%)
Frame = +1
Query: 175 PPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKID 354
P H H I G +G+ NKE H D+++ V LGN D+++
Sbjct: 344 PSNHNDKHASGSEGILFDTGKSGT----TNKEEPHEIDDHKKVESLGNLSSDEDFGDFAL 399
Query: 355 MIDPHLGIYRSTRDSRQGCGSTRAG 429
P L S++ S +G
Sbjct: 400 HSPPPLDDLTSSKTGHSDIESISSG 424
>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/85 (24%), Positives = 30/85 (35%)
Frame = +1
Query: 49 HHERSQPTRAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGG 228
HH T + ++ GN T + HV+G+ PG+ HV G +
Sbjct: 829 HHVPGYTTHHVPGNTAHHVPGNTTHHVPGNTTYHVQGNTAHHVPGNKTHHV--PGYTTHH 886
Query: 229 CGSTGSHFNPENKEHGHPSDENRHV 303
+H P N H P HV
Sbjct: 887 VPGNTTHHVPGNTTHHVPGYTTHHV 911
>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 151 VEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPEN 264
VEG V G H+ DI GCG + HF N
Sbjct: 173 VEGESVWWKKVEDGVEFHDVTDIPSGCGPSLHHFRSSN 210
>SB_30440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 247 HFNPENKEHGHPSDENRHVGDLGNAEF---DQNYSSKIDMIDPHLGIYRSTRDSRQ 405
H+N E+G E +H G +G E D + I I+P L + R+++ +R+
Sbjct: 4 HYNSTQLENGEIKSEKKHHGFIGTFEKRPPDPILQAAILKIEPCLSVSRTSQTARR 59
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 507 MTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVNAEMR 364
+TP+ T P + V ESG +V P+S+ T A P A N +R
Sbjct: 54 VTPETTSSPDITV--ESGTTVPPESTTTPGTTVATPEGTAAKGNTILR 99
>SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)
Length = 1502
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 435 SSARSCRTTALPRIPCAPVNAEMRVD 358
SS RSC + P IPC + EM D
Sbjct: 461 SSVRSCESALSPFIPCLSFHKEMHGD 486
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,458
Number of Sequences: 59808
Number of extensions: 387549
Number of successful extensions: 1448
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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