Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N01
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 99 1e-21
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 99 1e-21
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 99 1e-21
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 99 1e-21
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 87 1e-17
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 86 1e-17
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 86 1e-17
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 86 1e-17
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.001
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 29 1.7
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 29 1.7
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 29 1.7
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 29 1.7
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 27 8.8
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 27 8.8
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 99 bits (238), Expect = 1e-21
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 249
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
FNP K HG P E RHVGDLGN E + +KI + D + +Y
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLY 107
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 383 GAHGILGRAVVLHERADDFGR---TDHPDSRKTGNAGGRVACGVIGI 514
G + ++GR++V+H DD G +S+KTGNAG R ACGVI +
Sbjct: 108 GPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 99 bits (238), Expect = 1e-21
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 249
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
FNP K HG P E RHVGDLGN E + +KI + D + +Y
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLY 107
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 383 GAHGILGRAVVLHERADDFGR---TDHPDSRKTGNAGGRVACGVIGI 514
G + ++GR++V+H DD G +S+KTGNAG R ACGVI +
Sbjct: 108 GPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 99 bits (238), Expect = 1e-21
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 249
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
FNP K HG P E RHVGDLGN E + +KI + D + +Y
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLY 107
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 383 GAHGILGRAVVLHERADDFGR---TDHPDSRKTGNAGGRVACGVIGI 514
G + ++GR++V+H DD G +S+KTGNAG R ACGVI +
Sbjct: 108 GPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 99 bits (238), Expect = 1e-21
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 249
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 26 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 85
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
FNP K HG P E RHVGDLGN E + +KI + D + +Y
Sbjct: 86 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLY 129
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 383 GAHGILGRAVVLHERADDFGR---TDHPDSRKTGNAGGRVACGVIGI 514
G + ++GR++V+H DD G +S+KTGNAG R ACGVI +
Sbjct: 130 GPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 86.6 bits (205), Expect = 1e-17
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 249
RA+A L G + G + T+ +G+ EG I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 250 FNPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMIDPHLGIY 381
FNP HG RHVGDLGN E + +KI D + ++
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLF 127
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +2
Query: 344 ARLI*STRISAFTGAHGILGRAVVLHERADDFGR---TDHPDSRKTGNAGGRVACGVIGI 514
A++ S ++ + GA+ ++GR++V+H DD G+ +S KTGNAG R ACGVI +
Sbjct: 115 AKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACGVIAL 174
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 252
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 253 NPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMID 363
NP HG P D NRH+GDLGN E + + I + D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSD 125
Score = 61.3 bits (142), Expect = 4e-10
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 359 STRISAFTGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVIG 511
S +++ +G + I+GR+VV+HE+ DD GR S+ TGNAG R+ACG IG
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 252
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 253 NPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMID 363
NP HG P D NRH+GDLGN E + + I + D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSD 125
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +2
Query: 359 STRISAFTGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVIGIL 517
S +++ +G + I+GR+VV+HE+ DD GR S+ TGNAG R+ACG IGI+
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIV 176
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/97 (41%), Positives = 54/97 (55%)
Frame = +1
Query: 73 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 252
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 253 NPENKEHGHPSDENRHVGDLGNAEFDQNYSSKIDMID 363
NP HG P D NRH+GDLGN E + + I + D
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSD 125
Score = 61.3 bits (142), Expect = 4e-10
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +2
Query: 359 STRISAFTGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGGRVACGVIG 511
S +++ +G + I+GR+VV+HE+ DD GR S+ TGNAG R+ACG IG
Sbjct: 124 SDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 70 TRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGST 240
T A+A L+ G +I G TF++L + + G + LP G + +H+ GD S GC
Sbjct: 882 TIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 940
Query: 241 GSHFN 255
G+ F+
Sbjct: 941 GAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 70 TRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGST 240
T A+A L+ G +I G TF++L + + G + LP G + +H+ GD S GC
Sbjct: 673 TIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 731
Query: 241 GSHFN 255
G+ F+
Sbjct: 732 GAPFS 736
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 454 PRFEKNRQRWWTRRLRCHRNTVKHLSISLS 543
P+F KNR W LR N +KH ISLS
Sbjct: 111 PKFRKNRSLW----LRMEMNRIKHKLISLS 136
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 454 PRFEKNRQRWWTRRLRCHRNTVKHLSISLS 543
P+F KNR W LR N +KH ISLS
Sbjct: 111 PKFRKNRSLW----LRMEMNRIKHKLISLS 136
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 454 PRFEKNRQRWWTRRLRCHRNTVKHLSISLS 543
P+F KNR W LR N +KH ISLS
Sbjct: 111 PKFRKNRSLW----LRMEMNRIKHKLISLS 136
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 454 PRFEKNRQRWWTRRLRCHRNTVKHLSISLS 543
P+F KNR W LR N +KH ISLS
Sbjct: 39 PKFRKNRSLW----LRMEMNRIKHKLISLS 64
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 364 GRSYQSCWSSSGQIPRYQDP 305
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 364 GRSYQSCWSSSGQIPRYQDP 305
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,078
Number of Sequences: 27780
Number of extensions: 282467
Number of successful extensions: 838
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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