Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M22
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    28   3.9  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    28   3.9  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   6.9  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.1  
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    27   9.1  

>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = +3

Query: 189 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTTQEIKTSYPHN 368
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F  +  +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 369 FKVRQPRLNHKPFSVTIDVQSDIAT 443
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = +3

Query: 189 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTTQEIKTSYPHN 368
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F  +  +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 369 FKVRQPRLNHKPFSVTIDVQSDIAT 443
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 1   PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 126
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 189 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQ 305
           IN+ ++ L PY    L F+G    DVV+ + +T F + Q
Sbjct: 639 INSLQNSLNPYHLRYLEFIGA-YGDVVLPQALTSFYHLQ 676


>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 99  HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYP--QEKLHFVGVKIND 263
           H  +   L+ YQ  LR P+ +Q   R +G  ++ +    P P  QE    VG+ ++D
Sbjct: 208 HVNVIKRLEDYQAPLRPPSPFQGVGRTLGGGSSAEESQAPAPATQEPRRSVGIVVDD 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,894
Number of Sequences: 37544
Number of extensions: 227601
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)