Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M22
         (446 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein pr...    34   0.19 
BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein pr...    30   3.1  
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ...    30   3.1  
BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.        30   3.1  
AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.     30   3.1  

>BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein
            protein.
          Length = 1582

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63   HVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLK-PYPQEKLH 239
            H+   APK FD+ T +   +D    +  D   YQ Y RI+  I A     +   P E LH
Sbjct: 1337 HLYAWAPKSFDESTAIKVCIDQSADSEGDYMSYQAYIRILAKIQAADPVNRFKRPDELLH 1396

Query: 240  FVGVKINDVVVEKLVT 287
             + +K+   +  K VT
Sbjct: 1397 LLKLKVFPTLDHKPVT 1412


>BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein
            protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51   IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 221
            +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 928  LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 986



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 117  ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 296
            AL +   ALR P   ++Y   +  ++ FK+ LK YPQ   H   +         L  + +
Sbjct: 929  ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 988

Query: 297  YSQ 305
            Y Q
Sbjct: 989  YGQ 991


>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
            complex, subunit 1 protein.
          Length = 1551

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51   IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 221
            +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 933  LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 991



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 117  ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 296
            AL +   ALR P   ++Y   +  ++ FK+ LK YPQ   H   +         L  + +
Sbjct: 934  ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993

Query: 297  YSQ 305
            Y Q
Sbjct: 994  YGQ 996


>BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.
          Length = 1620

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 221
           +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 177 LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 235



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 117 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 296
           AL +   ALR P   ++Y   +  ++ FK+ LK YPQ   H   +         L  + +
Sbjct: 178 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 237

Query: 297 YSQ 305
           Y Q
Sbjct: 238 YGQ 240


>AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.
          Length = 1835

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 221
           +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 392 LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 450



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 117 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 296
           AL +   ALR P   ++Y   +  ++ FK+ LK YPQ   H   +         L  + +
Sbjct: 393 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 452

Query: 297 YSQ 305
           Y Q
Sbjct: 453 YGQ 455


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,609,850
Number of Sequences: 237096
Number of extensions: 1313974
Number of successful extensions: 6486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6486
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)