Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M22
(446 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 0.88
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 0.88
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 0.88
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 29 2.0
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 29 2.0
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 2.7
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 2.7
U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 8.2
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 0.88
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 10 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 159
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 0.88
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 10 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 159
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 0.88
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 10 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 159
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 16 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 174
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 273 EKLVTFFDYSQFDATNSVFLTTQEIKTS-YPHNFKVRQPRLNHKPFSVTIDVQSDIAT 443
E V+ +++S+ NS ++ I S Y +NF V N + F +I +SD+A+
Sbjct: 229 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 286
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 273 EKLVTFFDYSQFDATNSVFLTTQEIKTS-YPHNFKVRQPRLNHKPFSVTIDVQSDIAT 443
E V+ +++S+ NS ++ I S Y +NF V N + F +I +SD+A+
Sbjct: 238 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 295
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 85 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 210
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 85 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 210
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical
protein C01F1.5 protein.
Length = 308
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 84 KPFDKHTFMPSALDFYQTALRDPAFYQLYNR 176
KP K F PS DF + LRD AF Q+ R
Sbjct: 56 KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 26.6 bits (56), Expect = 8.2
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Frame = -1
Query: 284 D*FLNDNIIDFNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 123
D F N+ + N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 122 --KRT---GHEGVLVEWFRCCTEHM 63
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,242,277
Number of Sequences: 27780
Number of extensions: 206016
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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