Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M22
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative simil...    28   3.3  
At1g61950.1 68414.m06988 calcium-dependent protein kinase, putat...    27   5.8  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    27   5.8  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   7.6  
At1g79060.1 68414.m09218 expressed protein                             27   7.6  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    27   7.6  
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain...    27   7.6  

>At1g67420.1 68414.m07674 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 873

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 419 DGNTERLVVESWLTNLEVVWVTSLNLLG 336
           +  T R+ +E  L +LE +WVT LN+ G
Sbjct: 757 ENGTRRVHLELSLGSLEEIWVTVLNITG 784


>At1g61950.1 68414.m06988 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase GI:3283996 from [Nicotiana tabacum]; contains
           protein kinase domain, Pfam:PF00069; contains EF hand
           domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 551

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 234 LHFVGVKINDVVVEKLVTFFD-YSQFDATNSVFLTTQEIKTS 356
           + F+   +N   VE+    F  +  FD  NS F++ QE++T+
Sbjct: 459 IEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETA 500


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 383 LTNLEVVWVTSLNLLG 336
           LTNLEV+W+T  +L+G
Sbjct: 204 LTNLEVMWLTECHLVG 219


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 114 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVV 272
           S L     AL  P F+ + N  +  + A   YLKP+  + L     +  DV++
Sbjct: 220 SLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLL 272


>At1g79060.1 68414.m09218 expressed protein
          Length = 396

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 277 N*SHSLTIANLMPLTVYS*PPKRLRLVTHTTS 372
           N +H+LT     P    +  P R+RLV H+TS
Sbjct: 230 NLNHNLTANPFAPARSLNPNPPRMRLVNHSTS 261


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 291 FDYSQFDATNSVFLTTQEIKTSYPHNFKVRQPRLNHKPFSVT 416
           F  SQ  + +  F  +Q    S P  F V QPR N +PFS++
Sbjct: 453 FPVSQPSSNSKPFPVSQPQPASNP--FPVSQPRPNSQPFSMS 492


>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein similar to unknown protein
           GI:4262226 from [Arabidopsis thaliana] contains Pfam
           profile PF00564: PB1 domain
          Length = 272

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 210 LKPYPQEK-LHFVGVKINDVVVEKLVTFFDY 299
           + P P EK LH++G +   V+V + ++F D+
Sbjct: 21  IMPLPPEKSLHYIGGETRLVIVPRGISFLDF 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,615,515
Number of Sequences: 28952
Number of extensions: 188433
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)