Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M21
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    29   0.31 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   1.2  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   2.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   2.8  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.0  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    24   8.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   8.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   8.7  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -1

Query: 202 GLGSDILTLLLFAVNKMIAGIALVKVWHVP-------RILMYQYKQLTCTDEMKERLAPA 44
           G+  D++T     VNKM    AL+K +H P       R+ +   ++L C   +    AP+
Sbjct: 542 GVNKDLITRPFKNVNKMSVRKALIKPFHPPISKISRTRLTVSSPERLYCAKPISMATAPS 601

Query: 43  SSSAELV 23
            + ++L+
Sbjct: 602 ETDSKLI 608


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 20  SDEFRAG--RRRGQTLLHLIRTS*LFILVHKDSRNVPDFDKSD 142
           +D F A   R RG  +LH    S L +L +KD  ++   DKSD
Sbjct: 78  NDRFEAEGFRTRGLLILHTFTFSCLIVLTNKDKSSIK--DKSD 118


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 267 LLASQPIDLWLSTAITGPVSPRALVV 190
           LL    I +WLS A+ GPV+   L+V
Sbjct: 344 LLIGCAIPIWLSNALKGPVASVELLV 369


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  WYIRIRGTCQTLTRAIPAIILLTANNNRVKMSLPR 200
           W +     CQ    A  +I L+  NNNR  + LP+
Sbjct: 237 WLVEFSSVCQ----AAESISLIAVNNNRPPVELPK 267


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 142 IALVKVWHVPRILMYQYKQLTCTDEMKERLAPASSSA 32
           +A+V    V RIL+YQ +Q   T + ++R   A S A
Sbjct: 81  LAIVGAVQVSRILVYQRQQKRITAQSEQRTELARSLA 117


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 63  FISSVQVSCLYWYIRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVIL 215
           F   ++++C+Y Y+ +  T  +   ++PA  + T  +  + +SL    V L
Sbjct: 130 FRKKLKITCVYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFL 180


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 193  SDILTLLLFAVNKMIAGIALVKVWHVPRILMYQYK 89
            +DI+TL     N+  + IAL  V++V +  +Y YK
Sbjct: 1750 ADIITLFEKEANEHPSSIALHFVYNVDKENIYSYK 1784


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 TRAIPAIILLTANNNRVKMSLPRPVVILGQ 221
           T  +  + LL  NN +++  L   +V+LGQ
Sbjct: 127 TEDLKQLFLLIFNNGKLRTLLQNAIVLLGQ 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,971
Number of Sequences: 5004
Number of extensions: 32413
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)