Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M21
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 29 1.2
03_03_0126 + 14665374-14665539,14665790-14666127 27 4.9
12_01_0731 - 6516894-6517473,6517485-6519574 27 6.5
12_01_0727 + 6446283-6449300 27 6.5
12_01_0715 - 6230393-6231559,6233234-6234553 27 6.5
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 27 6.5
07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226... 27 6.5
05_04_0451 - 21365617-21366279 27 6.5
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 27 8.6
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 27 8.6
02_05_0322 - 27926619-27927686 27 8.6
01_01_0680 + 5217633-5219072 27 8.6
01_01_0430 + 3258438-3259200,3259929-3261454 27 8.6
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 296 RTNHRYRIVGFVD----NTYTGYRPNYRRTYTPNHNDGHQCEIRDID 424
R N RYR+VGFV+ + Y G+ Y R P +G R D
Sbjct: 678 RDNSRYRLVGFVEHLGPSMYAGHYVAYVRPSPPQQTNGSSSWFRASD 724
>03_03_0126 + 14665374-14665539,14665790-14666127
Length = 167
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 278 YGCHKIRTNHRYRIVGFVDNTYTGYRPNYRRTYTPN---HNDGHQCEIRDIDE 427
+G H R HRY + T TG+ R H+ H C + D++E
Sbjct: 40 HGRHYDRNQHRYWLKATFSTTVTGFGGEGGRRMQKKGHLHHHRHCCRLADLEE 92
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 102 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQS 251
I +G+ T+++ + ++L+ +NN +PR + G+L LL A+ S
Sbjct: 810 ISYKGSGLTISKTLRTLVLIDVSNNAFHGRIPRSI---GELVLLRALNMS 856
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 102 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQSAAMPT 266
+ +G T+++ + +++L+ +NN S+P + G+L LL + S M T
Sbjct: 823 VTYKGNDMTISKILTSLVLIDVSNNEFHGSIPSNI---GELTLLHGLNMSHNMLT 874
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 102 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWLLIAIGQS 251
I +G+ T+++ + ++L+ +NN +PR + G+L LL A+ S
Sbjct: 749 ISYKGSGLTISKTLRTLVLIDVSNNAFHGRIPRSI---GELVLLRALNMS 795
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 359 NYRRTYTPNHNDGHQC 406
N RRT+T +H DG QC
Sbjct: 472 NARRTHTSSHTDGVQC 487
>07_03_1172 -
24521582-24521714,24522028-24522200,24522459-24522677,
24523878-24524114,24524332-24524469
Length = 299
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 162 TANNNRVKMSLPRPVVILGQLWLLIAIGQ--SAAMPTEDATMVV 287
T RVK+ PR ++LGQ + LI + + + DAT ++
Sbjct: 97 TVRVTRVKLLKPRDALLLGQAYRLITVDEYKNTTEAAVDATRII 140
>05_04_0451 - 21365617-21366279
Length = 220
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 262 GIAAD*PMAINSHNWPSITTGLGSDILTLLLFAVNKMIAGIAL 134
G+A P+A N P + L ++ + LL V ++A +AL
Sbjct: 30 GVAGALPVAENGRGGPLAVSSLNTNTIVLLALLVCGLVAAVAL 72
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 193 SDILTLLLFAVNKMIAGIALVKVW 122
S +LT+LL V ++AG ++VK W
Sbjct: 488 SSLLTVLLIEVVLIVAGFSVVKKW 511
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 251 GCDANRGCNYGCHKIRTNHRYRIVGFVDNTYTGYRPNY 364
GC ++G H +RT H + + +N +G PN+
Sbjct: 432 GCGLDKGIIAEPHFLRTQHHLQELDLSNNNLSGRMPNW 469
>02_05_0322 - 27926619-27927686
Length = 355
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 18 PLTSSALDDAGARRSFISSVQVSCLYWYIRIRGTCQT 128
PLTS ++A RR +S+ +C W I RG +T
Sbjct: 145 PLTSFDWNEAEPRRIGTASIDTTCTIWDIE-RGVVET 180
>01_01_0680 + 5217633-5219072
Length = 479
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 287 HKIRTNHRYRIVGFVDNTYTGYRPNYRRTYTPNH 388
HK T H +R++G + TG P + PNH
Sbjct: 106 HKAATPHIHRLIGNGTSAATGLVPIFPTLTFPNH 139
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 102 IRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQL 224
+ +G T T+ + +L+ +NNR S+P + L L
Sbjct: 589 VTYKGLDLTFTKILKTFVLIDVSNNRFHGSIPETIATLSVL 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,114,829
Number of Sequences: 37544
Number of extensions: 220297
Number of successful extensions: 608
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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