Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M21
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   1.4  
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    27   4.4  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +1

Query: 268 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 366
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +1

Query: 268 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 366
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 121 HVPRILMYQYKQLTCTDEMKERLAPAS 41
           H+P+   YQY  L  TDE      P+S
Sbjct: 183 HIPQPFDYQYTDLLSTDEQNSSAIPSS 209


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 66  ISSVQVSCLYWYIRIRGTCQTLTRAIPAIILL 161
           +SS+Q+S LY++  I GT   +   +   IL+
Sbjct: 84  LSSIQISLLYFFPAIEGTLTKIQNLVIRFILI 115


>Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical
           protein C47E8.4 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 188 VTTKARGDTGPVMAVDSHRSIGCDANRGCNYG 283
           + TKA G TGP+   DS   +    +   +YG
Sbjct: 276 IVTKAMGKTGPLFVFDSASDVRIRQDAALDYG 307


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 TGYRPNYRRTYTPNHNDG 397
           T YR N RR  +P+H+DG
Sbjct: 118 TDYRVNRRRRLSPSHDDG 135


>AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical
           protein Y40H7A.1 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
 Frame = -1

Query: 289 VTTIVASSVGIAAD*PMAINSHNWPSI--------TTGLGSDILTLLLFAVNKMIAGIAL 134
           +T +   +   A +  + I S NWP+I          GL   ++ L L+ ++  + G+  
Sbjct: 184 MTEVYYVAASYAVENELGIRSLNWPTIFMVINFALIMGLSFSVILLCLYFIHHKMKGVTY 243

Query: 133 VKVWHVPRILMYQ 95
            KV+   +  +Y+
Sbjct: 244 SKVYEAVQKQLYR 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,213
Number of Sequences: 27780
Number of extensions: 189857
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)