Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M21
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   0.84 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   0.84 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.8  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 335 NTYTGYRPNYRRTYTPNHNDGHQ 403
           + Y  Y  NY   Y  N+N+ ++
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 335 NTYTGYRPNYRRTYTPNHNDGHQ 403
           + Y  Y  NY   Y  N+N+ ++
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNYK 114


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 SHRYHGFHIDVRHCD 384
           S  Y GF +D+RH D
Sbjct: 169 SWTYDGFQVDLRHID 183


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 SHRYHGFHIDVRHCD 384
           S  Y GF +D+RH D
Sbjct: 173 SWTYDGFKVDLRHMD 187


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 428 SHRYHGFHIDVRHCD 384
           S  Y GF +D+RH D
Sbjct: 173 SWTYDGFKVDLRHMD 187


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 89  FILVHKDSRNVPDFDKSDSCNHLVNGKQ**SQN---VTTKAR 205
           F  VH+  +NV  +D  +     VNGK+  S N   VTTK +
Sbjct: 103 FYFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAVTTKEK 144


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 311 YRIVGFVDNTYTGYRPNYRRTYTPNH 388
           ++I+  + N Y     NY++ Y  N+
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 311 YRIVGFVDNTYTGYRPNYRRTYTPNH 388
           ++I+  + N Y     NY++ Y  N+
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 311 YRIVGFVDNTYTGYRPNYRRTYTPNH 388
           ++I+  + N Y     NY++ Y  N+
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNY 104


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 235 INSHNWPSITTGLGSDILTL 176
           ++SH+   I TG G  I+T+
Sbjct: 76  VSSHSSNGIHTGFGGSIITI 95


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 295 YFVTTIVASSVGI 257
           Y VTTI+A+ VGI
Sbjct: 142 YTVTTILAAIVGI 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,570
Number of Sequences: 438
Number of extensions: 2478
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)