Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M21
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    29   1.4  
At5g24740.1 68418.m02920 expressed protein                             27   5.5  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    27   5.5  
At3g59770.1 68416.m06670 sacI homology domain-containing protein...    27   7.2  
At3g06930.2 68416.m00823 protein arginine N-methyltransferase fa...    26   9.6  
At3g06930.1 68416.m00822 protein arginine N-methyltransferase fa...    26   9.6  
At2g40400.2 68415.m04982 expressed protein similar to GI:7572912...    26   9.6  
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912...    26   9.6  
At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ...    26   9.6  

>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
            similarity to SP|Q56239 DNA mismatch repair protein mutS
            {Thermus aquaticus}; contains Pfam profiles PF05190: MutS
            family domain IV, PF01624: MutS domain I, PF01541:
            Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +3

Query: 21   LTSSALDDAGARRSFISSVQVSCL--YWYIRIRGTCQTLTRAIPAIILLTANNNRVKMSL 194
            L   +LD+        S ++++ L  YW+    GT    T  + ++ LLT  N   K SL
Sbjct: 718  LVGFSLDEGAKPLDGASRMKLTGLSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSL 777

Query: 195  PRPVVILGQLWL--LIAIGQSAAMPTEDATMVVTK 293
             R +     L +  L+   +SA +P  D+ M+  K
Sbjct: 778  LRSICAAALLGISGLMVPAESACIPHFDSIMLHMK 812


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 277  LWLSQNTNKPQIQNCRIRRQHLHRISTQLQKNI 375
            LW   +T+  Q+ N R+R++ L    +QL+ +I
Sbjct: 994  LWKQSSTDVSQVLNLRVRKRGLEPSGSQLEVSI 1026


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 280 IVASSVGIAAD*PMAINSHNWPSITTGLGSDILTLL 173
           +VA+      D P + +SH W  I  G+G+ +L LL
Sbjct: 258 VVATPPQTPVDPPGSSSSHKWIYIGIGIGAGLLLLL 293


>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
           WW domain-containing protein contains Pfam profiles
           PF00397: WW domain, PF02383: SacI homology domain;
           identical to cDNA SAC domain protein 9 (SAC9)
           GI:31415734
          Length = 1630

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 18  PLTSS--ALDDAGARRSFISSVQVSCLYWYIRIRGTCQTLTRAIPAIILLTANNNRVKMS 191
           P++S   A+  AGAR     +  +S LY +  + G    LTR + A+    A   R+ M+
Sbjct: 769 PISSEDMAVTGAGARLHEKDTSSLSLLYDFEELEGQLDFLTRVV-AVTFYPAGAVRIPMT 827

Query: 192 LPRPVVILG 218
           L + + +LG
Sbjct: 828 LGQ-IEVLG 835


>At3g06930.2 68416.m00823 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 535

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  VPRWTTPGPDAPSSHPYKL 84
           V RW T  P AP++H Y++
Sbjct: 401 VQRWLTTAPGAPTTHWYQI 419


>At3g06930.1 68416.m00822 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 534

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  VPRWTTPGPDAPSSHPYKL 84
           V RW T  P AP++H Y++
Sbjct: 401 VQRWLTTAPGAPTTHWYQI 419


>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 153 ILLTANNNRVKMSLPRPVVI 212
           I+ +ANNN+ K +LP P V+
Sbjct: 29  IIFSANNNQKKKNLPNPNVV 48


>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 153 ILLTANNNRVKMSLPRPVVI 212
           I+ +ANNN+ K +LP P V+
Sbjct: 29  IIFSANNNQKKKNLPNPNVV 48


>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
           similarity to SP|O22160 Thylakoid lumenal 15 kDa
           protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains Pfam profile PF00805: Pentapeptide
           repeats (8 copies)
          Length = 280

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 212 TGPVMAVDSHRSIGCDANRGCNYG 283
           T P+  VD+ +S+GC  +R   YG
Sbjct: 226 TNPLTGVDTRKSLGCGNSRRNAYG 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,416
Number of Sequences: 28952
Number of extensions: 174873
Number of successful extensions: 493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)