Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M20
(181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 0.76
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 5.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 5.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 5.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 5.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 5.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 5.3
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 5.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 5.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 5.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 5.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 5.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 5.3
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 22 9.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 22 9.3
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 22 9.3
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 0.76
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 74 LPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSF 178
+PLC D+ +LL + G RG+ I + K F
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKF 199
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 52 EFQKRHTPTPVLL*SRNNSKS 114
E ++R P+P+L NNSKS
Sbjct: 956 EVEERDPPSPLLQMLENNSKS 976
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 42 VIDRISKKAHTYPCAPVIT 98
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -1
Query: 145 TKNEPPIFNQEIWSYFVI 92
T EPP +Q IW V+
Sbjct: 261 TNTEPPPLDQTIWRQIVL 278
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 59 KKGTHLPLCSCDHEIT 106
K TH L SCD EIT
Sbjct: 190 KSATHPSLDSCDVEIT 205
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 8 SAAPPCRTARERDRSNFKKGTHLPLCSCDHEITPNLL 118
++AP R + +F++G LPL S + ++L
Sbjct: 42 TSAPSTPAIRRNNTDSFERGLSLPLPSSKQDTGSSVL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,915
Number of Sequences: 5004
Number of extensions: 14197
Number of successful extensions: 42
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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