Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M20
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586           30   0.30 
07_03_1794 - 29580767-29584189                                         25   6.5  
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    25   6.5  
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635...    25   6.5  
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    25   8.6  
04_01_0288 + 3824337-3826385                                           25   8.6  

>08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586
          Length = 356

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   FFSAAPPCRTARERDRSNFKKGTHLPL 82
           FF AAPPC  A++   S+ +   HLPL
Sbjct: 26  FFLAAPPCAAAQQVKTSHAQFAFHLPL 52


>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  PLHRAELRENVIDRISKKAHTYPCAPVITK 101
           P+   E    V + ++ K H  PCAP  TK
Sbjct: 87  PIRIQESTTTVQEVLNPKGHARPCAPHFTK 116


>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 53  NFKKGTHLPLCSCDHEITPNLLIKNRGFV 139
           N  +G HLP   C      NL I N+GFV
Sbjct: 310 NMSEGRHLPWELCQELEKFNLGIVNKGFV 338


>01_06_1060 +
           34162161-34162554,34162613-34162675,34163262-34163531,
           34163944-34164623
          Length = 468

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 24  AELRENVIDRISKKAHTYPCAPVITK*LQIS*LKIGGSFFVVFPFRVCRS 173
           AEL ++V+D + K+A    C     + L++  L    S  ++  F+VC S
Sbjct: 110 AELIDSVLDVVRKEAENCDCLQGCRRLLEVHPLTCCESRNMMHGFQVCHS 159


>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
            16611409-16611690,16611811-16612294,16612791-16612929,
            16613138-16613243,16613396-16613562,16613632-16613707,
            16614173-16614321,16614813-16614874,16615232-16615335,
            16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 164  HTEWKNHEKRTPDF*SGDLELFRDHRST 81
            H E ++H  R PD  S D E    H+S+
Sbjct: 951  HREKRHHRTRNPDTDSSDHEYEERHKSS 978


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 73  VCAFFEIRSITFSRSSARWSG 11
           V +F     I FSR+S RWSG
Sbjct: 362 VLSFRRAIKIVFSRNSRRWSG 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,857,091
Number of Sequences: 37544
Number of extensions: 97495
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)