Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M20
         (181 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_47798| Best HMM Match : Alpha_kinase (HMM E-Value=1.6e-28)          25   7.5  
SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.9  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             25   9.9  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            25   9.9  

>SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 20  PCRTARERDRSNFKKGTHLPLCSCDHEITPNLLIKNRGFVFRGFSIPCVP 169
           PC+     D+ ++    HLP C+ ++  T N    N G   +G    C+P
Sbjct: 318 PCQQCNSNDKFHWTNNNHLP-CNDNNSTTKNDYCDNGG--CKGHPYNCLP 364



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 20  PCRTARERDRSNFKKGTHLPLCSCDHEITPNLLIKNRGFVFRGFSIPCVP 169
           PC+     D+ ++    HLP C+ ++  T N    N   V +G    C+P
Sbjct: 235 PCQQCNSNDKFHWTNNNHLP-CNDNNPTTKNDYCDNG--VCKGHPYNCLP 281



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 20  PCRTARERDRSNFKKGTHLPLCSCDHEITPNLLIKNRGFVFRGFSIPCVP 169
           PC+     D+ ++    HLP C+ ++  T N    N   V +G    C+P
Sbjct: 401 PCQQCNSNDKFHWTNNNHLP-CNDNNPTTKNDYCDNG--VCKGHPYNCLP 447


>SB_47798| Best HMM Match : Alpha_kinase (HMM E-Value=1.6e-28)
          Length = 130

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 59  KKGTHLPLCSCDHEI--TPNLLIKNRGFVFRGFSIPCVPKSF 178
           K+ T  PL   +H I  T      N GFV R  ++ C P++F
Sbjct: 70  KERTGSPLYHLEHFIEGTYKKYNSNSGFVLRDETLRCTPQAF 111


>SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 87  EHRGRCVPFLKFDRSRSLAV 28
           E+RGR +P  K D SRS+ V
Sbjct: 283 ENRGRTLPLYKKDTSRSMHV 302


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 178 EGLRHTRNGKTTKNEPPIFNQEIWSYFVITGAQG 77
           EGLR T++    K EPP+ +     Y   +G  G
Sbjct: 58  EGLRVTQSNAVLKVEPPVASNGGGVYITWSGVSG 91


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 179 GRTSAHTEWKNHEKRTPD 126
           GRT  HT   NHEK T +
Sbjct: 676 GRTGGHTASDNHEKGTKE 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,764,519
Number of Sequences: 59808
Number of extensions: 116222
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)