Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M20
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily ass...    27   1.3  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical...    25   5.4  
Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase pro...    25   9.4  

>U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 226 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 62  KGTHLPLCSCDHEITPNLLIKNRGFV 139
           KG +L LC  DH   PN +    G V
Sbjct: 192 KGLYLDLCKYDHSCRPNAIYSCNGIV 217


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 8   SAAPPC-RTARERDRSNFKKGTHLPLCS 88
           + AP C R  R+R RS F   +  P+CS
Sbjct: 647 TGAPACARCGRDRSRSGFDNQSSCPVCS 674


>AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical
           protein C18E3.1 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  DRSNFKKGTHLPLCSCDHEITPNLLIK 124
           DRS  +K  H  LC+ D +I   L ++
Sbjct: 66  DRSKMRKAVHQDLCTHDQKILEPLFLR 92


>Z70207-2|CAA94130.2|  635|Caenorhabditis elegans Hypothetical
           protein F15A2.2 protein.
          Length = 635

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 142 KNEPPIFNQEIWSYFVITG 86
           +++PP+F   IW Y   TG
Sbjct: 237 RSQPPLFPHMIWEYTKATG 255


>AJ512338-1|CAD54511.1|  635|Caenorhabditis elegans trehalase
           protein.
          Length = 635

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 142 KNEPPIFNQEIWSYFVITG 86
           +++PP+F   IW Y   TG
Sbjct: 237 RSQPPLFPHMIWEYTKATG 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,909,992
Number of Sequences: 27780
Number of extensions: 83017
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)