Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M20
         (181 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23700.1 68414.m02992 protein kinase family protein contains ...    26   4.0  

>At1g23700.1 68414.m02992 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 473

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 46  SIEFQKRHTPTPVLL*SRNNSKSPD*KSGVRFSWFFHSVCAEVL 177
           ++E    H+PT VL  +  NS  P+ +   +FS  F  + A  L
Sbjct: 207 ALELAHGHSPTTVLPLNLQNSPFPNYEEDTKFSKSFRELVAACL 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,596,358
Number of Sequences: 28952
Number of extensions: 76471
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,070,560
effective HSP length: 39
effective length of database: 10,941,432
effective search space used: 218828640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)