Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M19
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 136 DGSHDDEHLERQTAEGS 86
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -2

Query: 423 YDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI*ISL 244
           +D F+  ++ KYV+     TISD    L  L  ++   L     VN  +F   +    S+
Sbjct: 351 FDSFVTYTDGKYVQVKVAATISDQH-KLPELAKLNHPTLGEEARVNTNVFNFTME---SV 406

Query: 243 SKGNPRGIVSKHTLHRQAYL 184
              N   +V KH +H  +YL
Sbjct: 407 ENPNVLRVVPKHYVHTTSYL 426


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
            protein Y67A10A.3 protein.
          Length = 1237

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 389  YLDSDMLMN-WSYKDVMLMSSDNMLRM*KPLFYLYLNNQINKQHFLNSKKKEKK 547
            + ++D L   W YK+ M     N +     L +  L  +IN +  L +  K KK
Sbjct: 1127 HFEADYLKTEWDYKNSMFEEMHNEILSTDELIHFLLAFEINSEKVLETNAKNKK 1180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,133
Number of Sequences: 27780
Number of extensions: 236831
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)