Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M19
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36670.2 68415.m04498 aspartyl protease family protein contai...    30   1.2  
At3g02740.1 68416.m00266 aspartyl protease family protein contai...    29   1.5  
At1g08210.1 68414.m00907 aspartyl protease family protein contai...    29   1.5  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   2.7  
At4g21240.1 68417.m03071 F-box family protein contains F-box dom...    28   4.7  
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    28   4.7  
At5g22850.1 68418.m02671 aspartyl protease family protein contai...    27   6.2  
At3g61270.1 68416.m06857 expressed protein                             27   6.2  
At3g28850.1 68416.m03599 glutaredoxin family protein                   27   6.2  
At2g45830.2 68415.m05700 expressed protein                             27   6.2  
At2g45830.1 68415.m05699 expressed protein                             27   6.2  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    27   6.2  

>At2g36670.2 68415.m04498 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 507

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 198 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 94
           RQ+ +  +VD  + G + P L G+  T +  G PP
Sbjct: 76  RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110


>At3g02740.1 68416.m00266 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 488

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 225 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 91
           G +  H +HR + L   +DI + G + P   G+    I  G P R
Sbjct: 52  GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96


>At1g08210.1 68414.m00907 aspartyl protease family protein contains
           Pfam profile PF00026: Eukaryotic aspartyl protease;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) {Nicotiana tabacum}
          Length = 492

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 216 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 91
           ++H    Q+ +  +V+  +DG + P L G+  T +  G PPR
Sbjct: 54  ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 174 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKP 13
           VD+S +  T P+ + +++ N    +      GN+ LCGKP ++L    S L  P
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP 298


>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 142 RYGFTIN*YVYYEGEIRLSVECMF 213
           R G  IN +VYYE +IR  V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 197 RWSVCFDTMPLGFPFDREIYMPTFFTNN 280
           +W+V  DT P+G  FD  I    +F  N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190


>At5g22850.1 68418.m02671 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 493

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 186 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 91
           L  ++D  +DG   P + G+  T +  G PPR
Sbjct: 61  LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92


>At3g61270.1 68416.m06857 expressed protein
          Length = 498

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 WSYKDVMLMSSDNMLRM*KPLFY-LYLNNQINKQHF 520
           WS  +  +M+ D+M    KP FY  Y+   +  QH+
Sbjct: 318 WSVSEKYIMACDSMTLYVKPRFYDFYIRGMMPLQHY 353


>At3g28850.1 68416.m03599 glutaredoxin family protein 
          Length = 428

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 223 HCVETYTPPTSVSRLHSRH 167
           HC   Y+PP  V R HS H
Sbjct: 14  HCRRGYSPPVDVQRSHSVH 32


>At2g45830.2 68415.m05700 expressed protein 
          Length = 382

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 WSYKDVMLMSSDNMLRM*KPLFY-LYLNNQINKQHF 520
           WS  +  +M+ D+M    +P+FY  Y+   +  QH+
Sbjct: 200 WSVSEKYIMACDSMTLYVRPMFYDFYVRGMMPLQHY 235


>At2g45830.1 68415.m05699 expressed protein 
          Length = 523

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 WSYKDVMLMSSDNMLRM*KPLFY-LYLNNQINKQHF 520
           WS  +  +M+ D+M    +P+FY  Y+   +  QH+
Sbjct: 341 WSVSEKYIMACDSMTLYVRPMFYDFYVRGMMPLQHY 376


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -2

Query: 105 GKPPRVPRGNRSLCGKP--RRLLYH 37
           GKPP    GN SLCGK     + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,657
Number of Sequences: 28952
Number of extensions: 216283
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)