Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M18
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   1.5  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   6.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   6.1  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.0  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 65  GATLSEKKFEDLEDSVEMSIAAFFSMKDIPNMLQDPNDPKREKSI 199
           G+ L  KK ED++ ++   ++    +  +  +++D  D   EKS+
Sbjct: 86  GSFLEAKKSEDMDSAIPGGMSYHHMLMSLLKVIKDAEDTTEEKSM 130


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 77  SEKKFEDLEDSVEMSIAAFFSMKDIPNMLQDPNDPKREKSILLELI 214
           S   +E    S  +SIA         + +  P+D  +EKS +LEL+
Sbjct: 105 SNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELL 150


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 244 PSGAQLYPHTQDATVHVERADSSLLRPRGPTRARHAKKF 360
           P  A+LYPH    T+  E   +      GP    H  +F
Sbjct: 27  PPKAELYPHMHFFTIDDELIYNPFYHDFGPLNVSHLIRF 65


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 77  SEKKFEDLEDSVEMSIAAFFSMKDIPNMLQDPNDPKREKSILLELI 214
           ++KK +    +V  S AA F+ +    + QDPND + E  +   LI
Sbjct: 43  AQKKKKISLPNVMTSKAAMFAARVASAVDQDPNDEESENFVYENLI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,494
Number of Sequences: 5004
Number of extensions: 24980
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)