Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M18
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1008 - 23271680-23273045,23273123-23273568 32 0.21
02_02_0113 + 6914562-6915260 31 0.47
08_02_0960 + 23058393-23059739 29 1.4
07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575 29 1.4
11_04_0164 + 14300622-14300978,14301277-14301357 29 1.9
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 28 3.3
01_05_0077 + 17928962-17929392,17929472-17929568,17929700-179297... 27 5.8
07_03_0414 + 17892133-17893590 27 7.7
03_05_0452 + 24464134-24464442 27 7.7
02_04_0536 + 23730396-23731736 27 7.7
>07_03_1008 - 23271680-23273045,23273123-23273568
Length = 603
Score = 31.9 bits (69), Expect = 0.21
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 271 TQDATVH--VERADSSLLRPRGPTRARHAKKFGRERCFPIPRVHW 399
T +A +H VERA S+LLRPRG + A + + ER V+W
Sbjct: 445 TDEAELHRAVERASSALLRPRGVSVAEYTSRACTERIPGHYVVYW 489
>02_02_0113 + 6914562-6915260
Length = 232
Score = 30.7 bits (66), Expect = 0.47
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 2 DTDKSIKDSVRAAAKYLEGKCGATLSEK 85
D + +KDSVR + K+++GKC + K
Sbjct: 204 DVEGKVKDSVRRSVKWIKGKCSRAVDGK 231
>08_02_0960 + 23058393-23059739
Length = 448
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +1
Query: 241 LPSGAQLYPHTQDATVHVERADSSLLRPRGPTRARHAKKFGRERCFPIP 387
+ SG L QDA V R S+LRP PT + + G E CFP P
Sbjct: 322 IDSGTSLTWLQQDAYDAVRRELVSVLRPLPPT---NDTEIGLETCFPWP 367
>07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575
Length = 478
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +1
Query: 292 VERADSSLLRPRGPTRARHAKKFGRERC---FPIPRVHWSRA 408
VERA S+LLRPRG + + + ER F HW+ A
Sbjct: 436 VERASSALLRPRGASIVEYTSRACTERVPGHFSPALPHWTLA 477
>11_04_0164 + 14300622-14300978,14301277-14301357
Length = 145
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 249 RRSALPSYTGRDCSCRARGLVTTATARTDSGA 344
RRS L G SCR G V+TA AR A
Sbjct: 85 RRSGLEGTRGVTASCRGEGGVSTAAARRGGAA 116
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 98 LEDSVEMSIAAFFSMKDIPNMLQDPNDPKREKSILLELIKYAFGGGA 238
+ D V ++ + +D P++L +K++++ LIK FG GA
Sbjct: 81 VHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAGA 127
>01_05_0077 +
17928962-17929392,17929472-17929568,17929700-17929747,
17929833-17929996,17930454-17930469
Length = 251
Score = 27.1 bits (57), Expect = 5.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 20 KDSVRAAAKYLEGKCGATLSEKKFEDL-EDSVEMSIAAFFSMKDIPNMLQDPN----DPK 184
KDS A ++ L+G T S KKF ++ D VE+ + +DI M N D +
Sbjct: 168 KDSTLAKSEILQGFTQET-SRKKFSEVGSDKVEIKVPFIADDEDIEEMADVDNNIESDEE 226
Query: 185 REKSILLELIKYAFGGG 235
E+ + + GG
Sbjct: 227 EEEDLFDSICSICDNGG 243
>07_03_0414 + 17892133-17893590
Length = 485
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 83 KKFEDLEDSVE--MSIAAFFSMKDIPNMLQDPNDPKREKSILLELIKYAFGGGARSL 247
K +DL++ V + +F +D+P+ +D +DP + + + A G AR+L
Sbjct: 166 KDGDDLDEPVRGVPGMESFLRRRDLPSQCRDCSDPDNDPLLQIVYGFTAHSGNARAL 222
>03_05_0452 + 24464134-24464442
Length = 102
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 292 VERADSSLLRPRGPTRARHAKKFGRERCF 378
VE+ SSLLR G R A G+ CF
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACF 49
>02_04_0536 + 23730396-23731736
Length = 446
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 258 ALPSYTGRDCSCRARGLVTTATARTDSGAPC*KVWARTVFSY 383
ALPSYT S A V TA D G K+ AR + SY
Sbjct: 287 ALPSYTAHQLSLVAATAVYTAAKYEDQGTVF-KLDAREIASY 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,787
Number of Sequences: 37544
Number of extensions: 183521
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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