Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M18
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              27   6.0  
SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19)                  27   7.9  

>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 206 ELIKYAFGGGARSLQALSFTLIHRTRLFMSSARTRHYCDRADRLGRAMLKSLGENGVFLY 385
           E +K  FG  + +L A+   ++ +    +    T+ Y   A  L + + + LGENGV ++
Sbjct: 235 EFLKAIFGLSSHTLPAIGLGMLEKFESLVPQGTTQAYLQMAQELRQELQRILGENGVLIF 294

Query: 386 P 388
           P
Sbjct: 295 P 295


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 80   EKKFEDL-EDSVEMSIAAFFSMKDIPNMLQDPNDPKREK 193
            EK+ +DL + SVE +I    S++   ++LQD    KREK
Sbjct: 4306 EKRSDDLSQSSVERNIEVIDSLQGCISILQDKTSEKREK 4344


>SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 585

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 216 NTRSGAERAPFRRSALPSYTGRDCSCRARGLVTTATA 326
           +T+   +R P  R+A+PSYT  D     +    T TA
Sbjct: 278 DTKLHVQRYPATRTAIPSYTYSDTKLHVQRYQVTRTA 314


>SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19)
          Length = 294

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 2   DTDKSIKDSVRAAAKYLEGKCGATLSEKKFEDLEDS 109
           DTDK +    + A +YLE + GAT+   +  +LE++
Sbjct: 15  DTDKEVFGCCQEALRYLESR-GATVVSIQIPELEEA 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,011
Number of Sequences: 59808
Number of extensions: 198498
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)